Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10825165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11003923	1.00[ASW][hapmap];0.92[CEU][hapmap]
rs11003961	0.92[CEU][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs11003972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11003979	0.96[CEU][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap]
rs11003981	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11003984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12763785	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap]
rs12770281	1.00[ASN][1000 genomes]
rs17709865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2135724	0.96[CEU][hapmap]
rs2253882	0.96[CEU][hapmap]
rs2610885	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2610890	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2610895	0.96[CEU][hapmap]
rs2610896	0.90[CEU][hapmap]
rs2610898	0.92[CEU][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap]
rs2660175	0.92[CEU][hapmap];0.92[GIH][hapmap];0.87[TSI][hapmap]
rs2660181	0.96[CEU][hapmap]
rs2926403	0.96[CEU][hapmap]
rs2939929	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10509003	MSMB	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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