Variant report

Variant	rs10825165
Chromosome Location	chr10:55684342-55684343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10509003	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11003923	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11003961	0.92[CEU][hapmap]
rs11003972	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11003979	0.96[CEU][hapmap]
rs11003981	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs11003984	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12763785	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs12770281	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709865	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2135724	0.96[CEU][hapmap]
rs2253882	0.96[CEU][hapmap]
rs2610885	0.96[CEU][hapmap]
rs2610890	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2610895	0.96[CEU][hapmap]
rs2610896	0.91[CEU][hapmap]
rs2610898	0.92[CEU][hapmap]
rs2660175	0.92[CEU][hapmap]
rs2660181	0.96[CEU][hapmap]
rs2926403	0.96[CEU][hapmap]
rs2939929	0.96[CEU][hapmap]
rs35391202	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55683800-55684400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr10:55683800-55684600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:55683800-55685400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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