Variant report
| Variant | rs11003984 |
|---|---|
| Chromosome Location | chr10:55758021-55758022 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:55757420..55758328-chr10:56162156..56162806,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10509003 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs10825137 | 0.81[CEU][hapmap] |
| rs10825165 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11003923 | 0.92[CEU][hapmap] |
| rs11003961 | 0.92[CEU][hapmap] |
| rs11003972 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs11003979 | 0.95[CEU][hapmap];0.86[YRI][hapmap] |
| rs11003981 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs12763785 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs12770281 | 1.00[ASN][1000 genomes] |
| rs17709865 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs2135724 | 0.96[CEU][hapmap] |
| rs2253882 | 0.96[CEU][hapmap] |
| rs2610885 | 0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2610890 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2610895 | 0.96[CEU][hapmap] |
| rs2610896 | 0.90[CEU][hapmap] |
| rs2610898 | 0.92[CEU][hapmap] |
| rs2660175 | 0.92[CEU][hapmap] |
| rs2660181 | 0.96[CEU][hapmap] |
| rs2926403 | 0.96[CEU][hapmap] |
| rs2939929 | 0.96[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1052939 | chr10:55654719-55769239 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
