Variant report

Variant	rs12571668
Chromosome Location	chr10:55727323-55727324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11003968	0.82[ASN][1000 genomes]
rs11003996	0.82[EUR][1000 genomes]
rs12570313	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571882	0.88[ASN][1000 genomes]
rs12572470	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900421	0.97[ASN][1000 genomes]
rs1900422	0.94[ASN][1000 genomes]
rs1900446	0.88[ASN][1000 genomes]
rs1900458	0.97[ASN][1000 genomes]
rs1900459	0.97[ASN][1000 genomes]
rs2121525	0.97[ASN][1000 genomes]
rs2166620	0.97[ASN][1000 genomes]
rs2166621	0.94[ASN][1000 genomes]
rs2166628	0.85[ASN][1000 genomes]
rs2253198	0.89[EUR][1000 genomes]
rs2384327	0.89[ASN][1000 genomes]
rs2384343	0.91[ASN][1000 genomes]
rs2446609	0.95[ASN][1000 genomes]
rs2456701	0.98[ASN][1000 genomes]
rs2593107	0.95[ASN][1000 genomes]
rs2593131	0.98[ASN][1000 genomes]
rs2610884	0.82[ASN][1000 genomes]
rs2610906	0.93[ASN][1000 genomes]
rs2660180	0.89[EUR][1000 genomes]
rs2660188	0.98[ASN][1000 genomes]
rs2660190	0.98[ASN][1000 genomes]
rs2660192	0.97[ASN][1000 genomes]
rs2926405	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2926406	0.83[EUR][1000 genomes]
rs2926408	0.92[ASN][1000 genomes]
rs6481045	0.97[ASN][1000 genomes]
rs7899816	0.80[ASN][1000 genomes]
rs7911482	0.97[ASN][1000 genomes]
rs7912992	0.97[ASN][1000 genomes]
rs7915856	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55726800-55728600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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