Variant report
| Variant | rs7899816 |
|---|---|
| Chromosome Location | chr10:55728020-55728021 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12571668 | 0.80[ASN][1000 genomes] |
| rs1900421 | 0.80[ASN][1000 genomes] |
| rs1900446 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1900458 | 0.80[ASN][1000 genomes] |
| rs1900459 | 0.80[ASN][1000 genomes] |
| rs2121525 | 0.80[ASN][1000 genomes] |
| rs2166620 | 0.80[ASN][1000 genomes] |
| rs2446609 | 0.83[EUR][1000 genomes] |
| rs2446610 | 0.80[EUR][1000 genomes] |
| rs2456701 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2593107 | 0.83[EUR][1000 genomes] |
| rs2593131 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2610906 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2660188 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2660190 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2660192 | 0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2926408 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6481045 | 0.80[ASN][1000 genomes] |
| rs7896419 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7896432 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7896582 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7911482 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7912992 | 0.80[ASN][1000 genomes] |
| rs7915856 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1842975 | chr10:55378668-55736655 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv895429 | chr10:55564355-55736655 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv895430 | chr10:55645953-55736655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1052939 | chr10:55654719-55769239 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:55726800-55728600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr10:55727600-55728600 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
