Variant report

Variant	rs1900422
Chromosome Location	chr10:55713642-55713643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10740557	0.85[EUR][1000 genomes]
rs10740558	0.87[EUR][1000 genomes]
rs10740559	0.88[EUR][1000 genomes]
rs10763019	0.86[EUR][1000 genomes]
rs10763020	0.87[EUR][1000 genomes]
rs10763021	0.87[EUR][1000 genomes]
rs10763022	0.87[EUR][1000 genomes]
rs10763024	0.87[EUR][1000 genomes]
rs10763025	0.87[EUR][1000 genomes]
rs10763027	0.87[EUR][1000 genomes]
rs10763028	0.88[EUR][1000 genomes]
rs10825155	0.87[EUR][1000 genomes]
rs10825156	0.87[EUR][1000 genomes]
rs10825157	0.87[EUR][1000 genomes]
rs10825159	0.86[EUR][1000 genomes]
rs10825161	0.87[EUR][1000 genomes]
rs10825185	0.80[EUR][1000 genomes]
rs12570313	0.95[ASN][1000 genomes]
rs12571668	0.94[ASN][1000 genomes]
rs12571882	0.85[ASN][1000 genomes]
rs12572470	0.95[ASN][1000 genomes]
rs1900421	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900423	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1900446	0.85[ASN][1000 genomes]
rs1900449	0.88[EUR][1000 genomes]
rs1900450	0.90[EUR][1000 genomes]
rs1900451	0.88[EUR][1000 genomes]
rs1900458	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900459	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2121525	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2135717	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2166620	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2166621	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2166627	0.80[EUR][1000 genomes]
rs2166628	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2246768	0.87[EUR][1000 genomes]
rs2384327	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2384332	0.88[EUR][1000 genomes]
rs2384333	0.88[EUR][1000 genomes]
rs2384334	0.89[EUR][1000 genomes]
rs2384343	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2446599	0.80[EUR][1000 genomes]
rs2446609	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2456701	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593103	0.88[EUR][1000 genomes]
rs2593105	0.87[EUR][1000 genomes]
rs2593107	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593119	0.87[EUR][1000 genomes]
rs2593120	0.87[EUR][1000 genomes]
rs2593122	0.87[EUR][1000 genomes]
rs2593124	0.88[EUR][1000 genomes]
rs2593129	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2593131	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593138	0.88[EUR][1000 genomes]
rs2593139	0.88[EUR][1000 genomes]
rs2593140	0.88[EUR][1000 genomes]
rs2610823	0.84[EUR][1000 genomes]
rs2610857	0.88[EUR][1000 genomes]
rs2610906	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2610919	0.80[AMR][1000 genomes]
rs2660188	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660190	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660192	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2921924	0.87[EUR][1000 genomes]
rs2926396	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2926398	0.88[EUR][1000 genomes]
rs2926399	0.87[EUR][1000 genomes]
rs2926408	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4427480	0.88[EUR][1000 genomes]
rs6481045	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7071158	0.84[EUR][1000 genomes]
rs7087311	0.84[EUR][1000 genomes]
rs7089258	0.88[EUR][1000 genomes]
rs7089762	0.88[EUR][1000 genomes]
rs7093596	0.87[EUR][1000 genomes]
rs7095839	0.88[EUR][1000 genomes]
rs7910658	0.91[EUR][1000 genomes]
rs7911482	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7912992	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915856	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55712200-55714400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:55712600-55716600	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:55712800-55717000	Weak transcription	Brain Substantia Nigra	brain
4	chr10:55713200-55714600	Weak transcription	HepG2	liver

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