Variant report

Variant	rs10825159
Chromosome Location	chr10:55658266-55658267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10740557	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10740558	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10740559	0.98[EUR][1000 genomes]
rs10763019	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10763020	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10763021	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10763022	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10763024	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10763025	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10763027	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10763028	0.98[EUR][1000 genomes]
rs10825155	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10825156	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10825157	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10825161	0.96[EUR][1000 genomes]
rs11003920	0.93[ASN][1000 genomes]
rs11003922	0.85[ASN][1000 genomes]
rs11003932	0.81[ASN][1000 genomes]
rs12218632	0.93[ASN][1000 genomes]
rs16937823	0.85[ASN][1000 genomes]
rs1900421	0.88[EUR][1000 genomes]
rs1900422	0.86[EUR][1000 genomes]
rs1900423	0.93[EUR][1000 genomes]
rs1900449	0.98[EUR][1000 genomes]
rs1900450	0.96[EUR][1000 genomes]
rs1900451	0.98[EUR][1000 genomes]
rs1900458	0.88[EUR][1000 genomes]
rs1900459	0.88[EUR][1000 genomes]
rs2069216	0.84[EUR][1000 genomes]
rs2121525	0.88[EUR][1000 genomes]
rs2166620	0.88[EUR][1000 genomes]
rs2166621	0.88[EUR][1000 genomes]
rs2166628	0.85[EUR][1000 genomes]
rs2246768	0.90[EUR][1000 genomes]
rs2384327	0.86[EUR][1000 genomes]
rs2384332	0.97[EUR][1000 genomes]
rs2384333	0.98[EUR][1000 genomes]
rs2384334	0.95[EUR][1000 genomes]
rs2384343	0.88[EUR][1000 genomes]
rs2593103	0.98[EUR][1000 genomes]
rs2593105	0.98[EUR][1000 genomes]
rs2593119	0.99[EUR][1000 genomes]
rs2593120	0.98[EUR][1000 genomes]
rs2593121	0.93[ASN][1000 genomes]
rs2593122	0.98[EUR][1000 genomes]
rs2593124	0.98[EUR][1000 genomes]
rs2593129	0.95[EUR][1000 genomes]
rs2593138	0.98[EUR][1000 genomes]
rs2593139	0.98[EUR][1000 genomes]
rs2593140	0.98[EUR][1000 genomes]
rs2610821	0.93[ASN][1000 genomes]
rs2610822	0.93[ASN][1000 genomes]
rs2610823	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2610857	0.98[EUR][1000 genomes]
rs2921924	0.99[EUR][1000 genomes]
rs2926390	0.93[ASN][1000 genomes]
rs2926396	0.92[EUR][1000 genomes]
rs2926398	0.98[EUR][1000 genomes]
rs2926399	0.96[EUR][1000 genomes]
rs4427480	0.98[EUR][1000 genomes]
rs56128987	0.93[ASN][1000 genomes]
rs61067206	0.93[ASN][1000 genomes]
rs61347407	0.89[ASN][1000 genomes]
rs6481045	0.88[EUR][1000 genomes]
rs7071158	0.93[EUR][1000 genomes]
rs7087311	0.91[EUR][1000 genomes]
rs7089258	0.96[EUR][1000 genomes]
rs7089762	0.96[EUR][1000 genomes]
rs7095839	0.98[EUR][1000 genomes]
rs7910658	0.94[EUR][1000 genomes]
rs7912992	0.88[EUR][1000 genomes]
rs7915856	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55654200-55658400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:55658200-55658600	Enhancers	Fetal Kidney	kidney
3	chr10:55658200-55658600	Enhancers	NHEK	skin
4	chr10:55658200-55658800	Enhancers	Fetal Intestine Large	intestine

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