Variant report

Variant	rs61347407
Chromosome Location	chr10:55661469-55661470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10740557	0.87[ASN][1000 genomes]
rs10740558	0.92[ASN][1000 genomes]
rs10763019	0.87[ASN][1000 genomes]
rs10763020	0.87[ASN][1000 genomes]
rs10763021	0.87[ASN][1000 genomes]
rs10763022	0.90[ASN][1000 genomes]
rs10763024	0.86[ASN][1000 genomes]
rs10763025	0.90[ASN][1000 genomes]
rs10763027	0.92[ASN][1000 genomes]
rs10825155	0.87[ASN][1000 genomes]
rs10825156	0.90[ASN][1000 genomes]
rs10825157	0.90[ASN][1000 genomes]
rs10825159	0.89[ASN][1000 genomes]
rs11003909	0.89[AMR][1000 genomes]
rs11003920	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11003922	0.80[ASN][1000 genomes]
rs11003931	0.90[ASN][1000 genomes]
rs11003932	0.92[ASN][1000 genomes]
rs11003945	0.89[ASN][1000 genomes]
rs12218632	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16937823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2593121	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2610821	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2610822	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2610823	0.87[ASN][1000 genomes]
rs2926390	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56128987	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59265266	0.86[ASN][1000 genomes]
rs61067206	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55658600-55663000	Weak transcription	NHEK	skin
2	chr10:55660600-55661800	Weak transcription	Fetal Intestine Small	intestine
3	chr10:55660600-55661800	Weak transcription	Fetal Kidney	kidney
4	chr10:55661400-55662200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links