Variant report

Variant	rs11003909
Chromosome Location	chr10:55646396-55646397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509001	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10740558	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10763020	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs10763021	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10763022	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10763024	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10763025	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10763027	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10825156	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10825157	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs11003896	0.82[CHB][hapmap]
rs11003901	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs11003908	0.86[AFR][1000 genomes]
rs11003918	0.82[JPT][hapmap]
rs11003919	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs11003920	0.82[CHB][hapmap];0.84[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11003945	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs12218632	0.82[CHB][hapmap];0.84[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16937805	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs16937812	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs16937823	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs1900456	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2069217	0.90[AFR][1000 genomes]
rs2384328	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2593106	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2593121	0.84[AMR][1000 genomes]
rs2593123	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2610821	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs2610822	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs2610823	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2610912	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2926390	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs2926391	0.82[CHB][hapmap]
rs2926410	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs41487044	0.90[AFR][1000 genomes]
rs56128987	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61067206	0.94[AMR][1000 genomes]
rs61347407	0.89[AMR][1000 genomes]
rs6481043	0.82[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55645800-55646600	Enhancers	Liver	Liver
2	chr10:55646000-55646800	Enhancers	Fetal Intestine Small	intestine
3	chr10:55646000-55647000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:55646200-55646600	Enhancers	Fetal Intestine Large	intestine
5	chr10:55646200-55646600	Active TSS	A549	lung
6	chr10:55646200-55647200	Enhancers	HepG2	liver

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