Variant report

Variant	rs6481043
Chromosome Location	chr10:55641505-55641506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10509001	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10740557	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10740558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10740559	0.86[EUR][1000 genomes]
rs10763016	0.91[CEU][hapmap];0.92[YRI][hapmap]
rs10763019	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10763020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10763021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10763022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10763024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10763025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10763027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10763028	0.86[EUR][1000 genomes]
rs10763038	0.86[CEU][hapmap]
rs10825138	1.00[CEU][hapmap]
rs10825147	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs10825148	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10825155	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10825156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10825157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10825159	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10825161	0.85[EUR][1000 genomes]
rs10825185	0.92[CEU][hapmap]
rs11003893	1.00[CEU][hapmap]
rs11003896	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11003897	0.91[CHB][hapmap]
rs11003898	0.92[CEU][hapmap]
rs11003901	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003902	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs11003909	0.82[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs11003918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003920	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003945	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003969	0.91[CEU][hapmap]
rs11003994	0.81[JPT][hapmap]
rs12218632	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16937805	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16937807	0.91[CHB][hapmap]
rs16937812	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16937823	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1900421	0.96[CEU][hapmap]
rs1900423	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1900424	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs1900425	0.91[CEU][hapmap];0.89[YRI][hapmap]
rs1900426	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs1900427	0.91[CEU][hapmap]
rs1900444	0.95[CEU][hapmap]
rs1900449	0.86[EUR][1000 genomes]
rs1900450	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1900451	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1900453	1.00[CEU][hapmap]
rs1900456	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1900458	0.96[CEU][hapmap]
rs1900459	0.96[CEU][hapmap]
rs1911420	0.87[CEU][hapmap]
rs1911427	0.87[CEU][hapmap]
rs1911429	0.87[CEU][hapmap]
rs1911430	0.83[CEU][hapmap]
rs2069216	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2121525	0.96[CEU][hapmap]
rs2135718	0.86[CEU][hapmap]
rs2135723	0.96[CEU][hapmap]
rs2174716	0.88[CEU][hapmap]
rs2384328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384332	0.85[EUR][1000 genomes]
rs2384333	0.86[EUR][1000 genomes]
rs2384334	0.84[EUR][1000 genomes]
rs2384340	1.00[CEU][hapmap]
rs2384343	0.96[CEU][hapmap]
rs2446600	0.92[CEU][hapmap]
rs2446608	0.85[CEU][hapmap]
rs2446609	0.83[CEU][hapmap]
rs2456699	0.88[CEU][hapmap]
rs2456701	0.81[CEU][hapmap]
rs2593103	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2593105	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2593106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2593119	0.87[EUR][1000 genomes]
rs2593120	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2593122	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2593123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2593124	0.86[EUR][1000 genomes]
rs2593129	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2593133	0.83[CEU][hapmap]
rs2593135	0.87[CEU][hapmap]
rs2593136	0.83[CEU][hapmap]
rs2593138	0.86[EUR][1000 genomes]
rs2593139	0.86[EUR][1000 genomes]
rs2593140	0.86[EUR][1000 genomes]
rs2610821	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2610822	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2610823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2610837	0.95[CEU][hapmap]
rs2610857	0.86[EUR][1000 genomes]
rs2610874	0.87[CEU][hapmap]
rs2610893	0.91[CEU][hapmap]
rs2610899	0.83[CEU][hapmap]
rs2610902	0.90[CEU][hapmap]
rs2610908	0.87[CEU][hapmap]
rs2610909	0.88[CEU][hapmap]
rs2610910	0.88[CEU][hapmap]
rs2610912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2610919	1.00[CEU][hapmap]
rs2660172	0.83[CEU][hapmap]
rs2660173	0.87[CEU][hapmap]
rs2660178	0.96[CEU][hapmap]
rs2660183	0.86[CEU][hapmap]
rs2660184	0.87[CEU][hapmap]
rs2660190	0.82[CEU][hapmap]
rs2660197	0.88[CEU][hapmap]
rs2921912	1.00[CEU][hapmap]
rs2921924	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2921925	1.00[CEU][hapmap]
rs2921926	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[YRI][hapmap]
rs2926390	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2926391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs2926396	0.81[EUR][1000 genomes]
rs2926397	1.00[CEU][hapmap]
rs2926398	0.86[EUR][1000 genomes]
rs2926399	0.85[EUR][1000 genomes]
rs2926404	0.92[CEU][hapmap]
rs2926410	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4287256	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs4364970	0.92[CEU][hapmap];0.93[YRI][hapmap]
rs4376818	0.92[CEU][hapmap]
rs4427480	0.86[EUR][1000 genomes]
rs4466737	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs4478892	0.91[CEU][hapmap];0.89[YRI][hapmap]
rs4478893	0.91[CEU][hapmap]
rs4488105	0.91[CEU][hapmap];0.87[YRI][hapmap]
rs4488106	0.91[CEU][hapmap];0.92[YRI][hapmap]
rs4586053	0.92[CEU][hapmap]
rs4935485	0.88[CEU][hapmap]
rs4935487	0.84[CEU][hapmap]
rs5003374	0.91[CEU][hapmap]
rs6481045	0.96[CEU][hapmap]
rs7069577	0.88[CEU][hapmap]
rs7071158	0.82[EUR][1000 genomes]
rs7073930	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs7083009	0.84[CEU][hapmap]
rs7089258	0.85[EUR][1000 genomes]
rs7089762	0.84[EUR][1000 genomes]
rs7091282	0.92[CEU][hapmap]
rs7095839	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7097365	0.91[CEU][hapmap]
rs7476991	0.88[CEU][hapmap]
rs7893789	1.00[CEU][hapmap]
rs7904289	1.00[CEU][hapmap]
rs7905665	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs7905801	0.92[CEU][hapmap];0.90[YRI][hapmap]
rs7910658	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7920872	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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