Variant report

Variant	rs7476991
Chromosome Location	chr10:55728961-55728962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10509002	1.00[CHB][hapmap]
rs10740557	0.88[CEU][hapmap]
rs10740558	0.88[CEU][hapmap]
rs10740559	1.00[ASN][1000 genomes]
rs10763020	0.88[CEU][hapmap]
rs10763021	0.88[CEU][hapmap]
rs10763022	0.87[CEU][hapmap]
rs10763024	0.88[CEU][hapmap]
rs10763025	0.88[CEU][hapmap]
rs10763027	0.88[CEU][hapmap]
rs10763028	1.00[ASN][1000 genomes]
rs10763038	0.95[CEU][hapmap]
rs10825138	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs10825156	0.88[CEU][hapmap]
rs10825157	0.92[CEU][hapmap]
rs10825161	1.00[ASN][1000 genomes]
rs10825185	0.81[CEU][hapmap]
rs11003889	1.00[CHB][hapmap]
rs11003893	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs11003898	0.81[CEU][hapmap]
rs11003902	0.81[CEU][hapmap]
rs11003918	0.91[CEU][hapmap]
rs11003919	0.88[CEU][hapmap]
rs11003969	0.80[CEU][hapmap]
rs11812585	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17704703	1.00[ASN][1000 genomes]
rs1900421	0.85[CEU][hapmap]
rs1900423	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900424	0.81[CEU][hapmap]
rs1900425	0.84[CEU][hapmap]
rs1900426	0.81[CEU][hapmap]
rs1900427	0.84[CEU][hapmap]
rs1900444	0.84[CEU][hapmap]
rs1900449	1.00[ASN][1000 genomes]
rs1900450	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900451	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900453	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1900458	0.88[CEU][hapmap]
rs1900459	0.84[CEU][hapmap]
rs1911420	0.96[CEU][hapmap]
rs1911427	0.96[CEU][hapmap]
rs1911429	0.96[CEU][hapmap]
rs1911430	0.96[CEU][hapmap]
rs2121525	0.88[CEU][hapmap]
rs2135718	0.87[CEU][hapmap]
rs2135723	0.85[CEU][hapmap]
rs2384328	0.88[CEU][hapmap]
rs2384332	1.00[ASN][1000 genomes]
rs2384333	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2384334	1.00[ASN][1000 genomes]
rs2384340	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2384343	0.88[CEU][hapmap]
rs2446600	0.81[CEU][hapmap]
rs2446608	1.00[CEU][hapmap]
rs2446609	0.96[CEU][hapmap]
rs2456699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs2456701	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2593103	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593105	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593106	0.88[CEU][hapmap]
rs2593107	0.86[CEU][hapmap]
rs2593119	1.00[ASN][1000 genomes]
rs2593120	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593122	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593123	0.88[CEU][hapmap]
rs2593124	1.00[ASN][1000 genomes]
rs2593129	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs2593131	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2593133	0.96[CEU][hapmap]
rs2593135	0.96[CEU][hapmap]
rs2593136	0.96[CEU][hapmap]
rs2593138	1.00[ASN][1000 genomes]
rs2593139	1.00[ASN][1000 genomes]
rs2593140	1.00[ASN][1000 genomes]
rs2610823	0.88[CEU][hapmap]
rs2610837	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2610847	1.00[CHB][hapmap]
rs2610857	1.00[ASN][1000 genomes]
rs2610874	0.81[CEU][hapmap]
rs2610893	1.00[CEU][hapmap]
rs2610899	0.96[CEU][hapmap]
rs2610902	0.90[CEU][hapmap]
rs2610906	0.82[EUR][1000 genomes]
rs2610908	1.00[CEU][hapmap]
rs2610909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs2610910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2610912	0.88[CEU][hapmap]
rs2610919	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2660172	0.96[CEU][hapmap]
rs2660173	0.96[CEU][hapmap]
rs2660178	0.88[CEU][hapmap]
rs2660183	0.95[CEU][hapmap]
rs2660184	0.96[CEU][hapmap]
rs2660186	0.92[CEU][hapmap]
rs2660188	0.82[EUR][1000 genomes]
rs2660190	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2660192	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2660197	1.00[CEU][hapmap]
rs2921912	0.88[CEU][hapmap]
rs2921924	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921925	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2921926	0.88[CEU][hapmap]
rs2926391	0.88[CEU][hapmap]
rs2926396	1.00[ASN][1000 genomes]
rs2926397	0.92[CEU][hapmap]
rs2926398	1.00[ASN][1000 genomes]
rs2926404	0.81[CEU][hapmap]
rs2926408	0.80[EUR][1000 genomes]
rs2926410	0.85[CEU][hapmap]
rs4287256	0.81[CEU][hapmap]
rs4364970	0.81[CEU][hapmap]
rs4376818	0.81[CEU][hapmap]
rs4427480	1.00[ASN][1000 genomes]
rs4466737	0.81[CEU][hapmap]
rs4478892	0.84[CEU][hapmap]
rs4478893	0.84[CEU][hapmap]
rs4488105	0.80[CEU][hapmap]
rs4586053	0.81[CEU][hapmap]
rs5003374	0.84[CEU][hapmap]
rs61858296	1.00[ASN][1000 genomes]
rs6481043	0.88[CEU][hapmap]
rs6481045	0.85[CEU][hapmap]
rs7073930	0.81[CEU][hapmap]
rs7089258	1.00[ASN][1000 genomes]
rs7089762	1.00[ASN][1000 genomes]
rs7091282	0.81[CEU][hapmap]
rs7095839	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7097365	0.84[CEU][hapmap]
rs72797031	1.00[ASN][1000 genomes]
rs7893789	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7904289	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7905665	0.81[CEU][hapmap]
rs7905801	0.81[CEU][hapmap]
rs7910658	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7911482	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links