Variant report

Variant	rs1911420
Chromosome Location	chr10:55752601-55752602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10740557	0.87[CEU][hapmap]
rs10740558	0.87[CEU][hapmap]
rs10763016	0.81[CEU][hapmap]
rs10763020	0.87[CEU][hapmap]
rs10763021	0.87[CEU][hapmap]
rs10763022	0.86[CEU][hapmap]
rs10763024	0.87[CEU][hapmap]
rs10763025	0.87[CEU][hapmap]
rs10763027	0.87[CEU][hapmap]
rs10763038	0.91[CEU][hapmap]
rs10825138	0.87[CEU][hapmap]
rs10825156	0.87[CEU][hapmap]
rs10825157	0.87[CEU][hapmap]
rs10825185	0.83[CEU][hapmap]
rs11003893	0.87[CEU][hapmap]
rs11003918	0.91[CEU][hapmap]
rs11003919	0.87[CEU][hapmap]
rs11003969	0.82[CEU][hapmap]
rs11004028	0.83[CHD][hapmap]
rs11594564	0.83[CHD][hapmap]
rs11598849	1.00[ASW][hapmap];0.91[CHD][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap]
rs12242499	0.83[CHD][hapmap]
rs12257494	0.83[CHD][hapmap]
rs17636887	0.81[CHD][hapmap];0.89[MKK][hapmap]
rs17643564	0.83[CHD][hapmap]
rs1900421	0.83[CEU][hapmap]
rs1900423	0.87[CEU][hapmap]
rs1900444	0.82[CEU][hapmap]
rs1900450	0.87[CEU][hapmap]
rs1900451	0.87[CEU][hapmap]
rs1900453	0.87[CEU][hapmap]
rs1900458	0.83[CEU][hapmap]
rs1900459	0.83[CEU][hapmap]
rs1911427	0.91[CEU][hapmap]
rs1911429	0.91[CEU][hapmap]
rs1911430	0.91[CEU][hapmap]
rs2121525	0.83[CEU][hapmap]
rs2135718	0.91[CEU][hapmap]
rs2135723	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs2174716	0.88[CEU][hapmap]
rs2384328	0.87[CEU][hapmap]
rs2384340	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs2384343	0.83[CEU][hapmap]
rs2446600	0.92[CEU][hapmap]
rs2446608	1.00[CEU][hapmap]
rs2446609	0.91[CEU][hapmap]
rs2456699	0.96[CEU][hapmap]
rs2456701	0.90[CEU][hapmap]
rs2593103	0.87[CEU][hapmap]
rs2593105	0.87[CEU][hapmap]
rs2593106	0.87[CEU][hapmap]
rs2593107	0.82[CEU][hapmap]
rs2593120	0.87[CEU][hapmap]
rs2593122	0.87[CEU][hapmap]
rs2593123	0.87[CEU][hapmap]
rs2593129	0.91[CEU][hapmap]
rs2593133	0.91[CEU][hapmap]
rs2593135	0.91[CEU][hapmap]
rs2593136	0.91[CEU][hapmap]
rs2610823	0.87[CEU][hapmap]
rs2610837	0.82[CEU][hapmap]
rs2610874	0.84[CEU][hapmap]
rs2610893	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap]
rs2610899	0.91[CEU][hapmap]
rs2610902	0.84[CEU][hapmap]
rs2610908	0.95[CEU][hapmap]
rs2610909	0.96[CEU][hapmap]
rs2610910	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2610912	0.87[CEU][hapmap]
rs2610919	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs2660152	0.83[CHD][hapmap]
rs2660154	0.83[CHD][hapmap]
rs2660172	0.91[CEU][hapmap]
rs2660173	0.91[CEU][hapmap]
rs2660178	0.92[CEU][hapmap]
rs2660183	0.91[CEU][hapmap]
rs2660184	0.91[CEU][hapmap]
rs2660186	0.87[CEU][hapmap]
rs2660190	0.91[CEU][hapmap]
rs2660197	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2921912	0.87[CEU][hapmap]
rs2921924	0.87[CEU][hapmap]
rs2921925	0.87[CEU][hapmap]
rs2921926	0.87[CEU][hapmap]
rs2926391	0.87[CEU][hapmap]
rs2926397	0.87[CEU][hapmap]
rs2926404	0.92[CEU][hapmap]
rs2926410	0.83[CEU][hapmap]
rs3812657	0.81[CHD][hapmap]
rs4935485	0.88[CEU][hapmap]
rs4935487	0.84[CEU][hapmap]
rs5003374	0.88[CEU][hapmap]
rs6481043	0.87[CEU][hapmap]
rs6481045	0.83[CEU][hapmap]
rs7069577	0.88[CEU][hapmap]
rs7095839	0.87[CEU][hapmap]
rs7476991	0.96[CEU][hapmap]
rs7893789	0.87[CEU][hapmap]
rs7904289	0.87[CEU][hapmap]
rs7910658	0.87[CEU][hapmap]
rs7920872	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1911420	PCDH15	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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