Variant report

Variant	rs2446600
Chromosome Location	chr10:55760138-55760139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55755176..55757929-chr10:55758300..55761656,3	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10740557	0.92[CEU][hapmap]
rs10740558	0.92[CEU][hapmap]
rs10763016	0.86[CEU][hapmap]
rs10763020	0.92[CEU][hapmap]
rs10763021	0.92[CEU][hapmap]
rs10763022	0.91[CEU][hapmap]
rs10763024	0.92[CEU][hapmap]
rs10763025	0.92[CEU][hapmap]
rs10763027	0.92[CEU][hapmap]
rs10763038	0.82[CEU][hapmap]
rs10825138	0.92[CEU][hapmap]
rs10825148	0.83[CEU][hapmap]
rs10825156	0.92[CEU][hapmap]
rs10825157	0.96[CEU][hapmap]
rs10825185	0.92[CEU][hapmap]
rs11003893	0.92[CEU][hapmap]
rs11003898	0.84[CEU][hapmap]
rs11003902	0.84[CEU][hapmap]
rs11003918	0.91[CEU][hapmap]
rs11003919	0.92[CEU][hapmap]
rs11003969	0.92[CEU][hapmap]
rs1900421	0.88[CEU][hapmap]
rs1900423	0.92[CEU][hapmap]
rs1900424	0.84[CEU][hapmap]
rs1900425	0.87[CEU][hapmap]
rs1900426	0.84[CEU][hapmap]
rs1900427	0.87[CEU][hapmap]
rs1900444	0.87[CEU][hapmap]
rs1900450	0.92[CEU][hapmap]
rs1900451	0.92[CEU][hapmap]
rs1900453	0.95[CEU][hapmap]
rs1900458	0.91[CEU][hapmap]
rs1900459	0.88[CEU][hapmap]
rs1911390	0.83[JPT][hapmap]
rs1911394	0.84[JPT][hapmap]
rs1911397	0.88[JPT][hapmap]
rs1911414	0.89[JPT][hapmap]
rs1911420	0.92[CEU][hapmap]
rs1911427	0.83[CEU][hapmap]
rs1911428	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1911429	0.83[CEU][hapmap]
rs2121525	0.91[CEU][hapmap]
rs2135718	0.91[CEU][hapmap]
rs2135723	0.96[CEU][hapmap];0.80[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2174716	0.96[CEU][hapmap]
rs2384328	0.92[CEU][hapmap]
rs2384340	0.96[CEU][hapmap]
rs2384343	0.91[CEU][hapmap]
rs2446599	0.83[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2446608	0.85[CEU][hapmap]
rs2456699	0.81[CEU][hapmap]
rs2593103	0.96[CEU][hapmap]
rs2593105	0.96[CEU][hapmap]
rs2593106	0.92[CEU][hapmap]
rs2593120	0.96[CEU][hapmap]
rs2593122	0.96[CEU][hapmap]
rs2593123	0.92[CEU][hapmap]
rs2593129	0.92[CEU][hapmap]
rs2593135	0.83[CEU][hapmap]
rs2610823	0.92[CEU][hapmap]
rs2610837	0.91[CEU][hapmap]
rs2610874	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2610893	0.87[CEU][hapmap]
rs2610902	0.81[CEU][hapmap]
rs2610909	0.81[CEU][hapmap]
rs2610910	0.81[CEU][hapmap]
rs2610912	0.92[CEU][hapmap]
rs2610919	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2660173	0.83[CEU][hapmap]
rs2660178	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2660183	0.82[CEU][hapmap]
rs2660184	0.83[CEU][hapmap]
rs2660197	0.81[CEU][hapmap]
rs2921912	0.92[CEU][hapmap]
rs2921924	0.92[CEU][hapmap]
rs2921925	0.96[CEU][hapmap]
rs2921926	0.92[CEU][hapmap]
rs2926391	0.92[CEU][hapmap]
rs2926397	0.96[CEU][hapmap]
rs2926404	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap]
rs2926410	0.88[CEU][hapmap]
rs3812658	0.88[JPT][hapmap]
rs4287256	0.84[CEU][hapmap]
rs4364970	0.84[CEU][hapmap]
rs4376818	0.84[CEU][hapmap]
rs4466737	0.84[CEU][hapmap]
rs4478892	0.87[CEU][hapmap]
rs4478893	0.87[CEU][hapmap]
rs4488105	0.83[CEU][hapmap]
rs4488106	0.83[CEU][hapmap]
rs4586053	0.84[CEU][hapmap]
rs4935485	0.96[CEU][hapmap]
rs4935487	0.92[CEU][hapmap]
rs5003374	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6481043	0.92[CEU][hapmap]
rs6481045	0.88[CEU][hapmap]
rs7069577	0.96[CEU][hapmap]
rs7070828	0.82[CEU][hapmap]
rs7073930	0.84[CEU][hapmap]
rs7091282	0.84[CEU][hapmap]
rs7095839	0.92[CEU][hapmap]
rs7097365	0.87[CEU][hapmap]
rs7476991	0.81[CEU][hapmap]
rs7893789	0.92[CEU][hapmap]
rs7904289	0.92[CEU][hapmap]
rs7905665	0.84[CEU][hapmap]
rs7905801	0.84[CEU][hapmap]
rs7910658	0.96[CEU][hapmap]
rs7911734	0.81[JPT][hapmap]
rs7920872	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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