Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10825157	0.81[CEU][hapmap]
rs10825185	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11003969	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1900453	0.81[CEU][hapmap]
rs1900458	0.86[CEU][hapmap]
rs2121525	0.86[CEU][hapmap]
rs2135718	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs2174716	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs2384340	0.81[CEU][hapmap]
rs2384343	0.86[CEU][hapmap]
rs2446599	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2446600	0.82[CEU][hapmap]
rs2593103	0.81[CEU][hapmap]
rs2593105	0.81[CEU][hapmap]
rs2593120	0.81[CEU][hapmap]
rs2593122	0.81[CEU][hapmap]
rs2610874	0.91[CEU][hapmap]
rs2660178	0.86[CEU][hapmap]
rs2921925	0.81[CEU][hapmap]
rs2926397	0.81[CEU][hapmap]
rs2926404	0.82[CEU][hapmap]
rs4935485	0.87[CEU][hapmap]
rs4935487	0.87[CEU][hapmap]
rs5003374	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7069577	0.87[CEU][hapmap]
rs7910658	0.81[CEU][hapmap]
rs7920872	0.87[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55769400-55770800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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