Variant report

Variant	rs2135718
Chromosome Location	chr10:55756629-55756630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55755176..55757929-chr10:55758300..55761656,3	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10740557	0.86[CEU][hapmap]
rs10740558	0.86[CEU][hapmap]
rs10763020	0.86[CEU][hapmap]
rs10763021	0.86[CEU][hapmap]
rs10763022	0.86[CEU][hapmap]
rs10763024	0.86[CEU][hapmap]
rs10763025	0.86[CEU][hapmap]
rs10763027	0.86[CEU][hapmap]
rs10763038	0.91[CEU][hapmap];0.80[TSI][hapmap]
rs10825138	0.86[CEU][hapmap]
rs10825156	0.86[CEU][hapmap]
rs10825157	0.86[CEU][hapmap]
rs10825185	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11003893	0.86[CEU][hapmap]
rs11003918	0.90[CEU][hapmap]
rs11003919	0.86[CEU][hapmap]
rs11003969	0.90[CEU][hapmap];0.90[CHB][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16937849	0.80[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1900421	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1900422	0.82[EUR][1000 genomes]
rs1900423	0.86[CEU][hapmap]
rs1900444	0.90[CEU][hapmap]
rs1900450	0.86[CEU][hapmap]
rs1900451	0.86[CEU][hapmap]
rs1900453	0.86[CEU][hapmap]
rs1900458	0.91[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1900459	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1911420	0.91[CEU][hapmap]
rs1911427	0.91[CEU][hapmap]
rs1911428	0.82[EUR][1000 genomes]
rs1911429	0.91[CEU][hapmap]
rs1911430	0.91[CEU][hapmap]
rs2121525	0.91[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs2135723	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs2166620	0.81[EUR][1000 genomes]
rs2166621	0.81[EUR][1000 genomes]
rs2166628	0.82[EUR][1000 genomes]
rs2174716	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap]
rs2384328	0.86[CEU][hapmap]
rs2384340	0.86[CEU][hapmap]
rs2384343	0.91[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs2446599	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446600	0.91[CEU][hapmap]
rs2446608	0.94[CEU][hapmap]
rs2446609	0.91[CEU][hapmap]
rs2456699	0.87[CEU][hapmap]
rs2456701	0.90[CEU][hapmap]
rs2593103	0.86[CEU][hapmap]
rs2593105	0.86[CEU][hapmap]
rs2593106	0.86[CEU][hapmap]
rs2593120	0.86[CEU][hapmap]
rs2593122	0.86[CEU][hapmap]
rs2593123	0.86[CEU][hapmap]
rs2593129	0.85[CEU][hapmap]
rs2593133	0.91[CEU][hapmap]
rs2593135	0.91[CEU][hapmap]
rs2593136	0.91[CEU][hapmap]
rs2610823	0.86[CEU][hapmap]
rs2610837	0.82[CEU][hapmap];0.83[TSI][hapmap]
rs2610874	0.83[CEU][hapmap]
rs2610893	0.86[CEU][hapmap]
rs2610899	0.91[CEU][hapmap]
rs2610902	0.94[CEU][hapmap]
rs2610908	0.90[CEU][hapmap]
rs2610909	0.87[CEU][hapmap]
rs2610910	0.87[CEU][hapmap]
rs2610912	0.86[CEU][hapmap]
rs2610919	0.86[CEU][hapmap]
rs2660172	0.91[CEU][hapmap]
rs2660173	0.91[CEU][hapmap]
rs2660178	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2660183	0.91[CEU][hapmap]
rs2660184	0.91[CEU][hapmap]
rs2660186	0.87[CEU][hapmap]
rs2660190	0.90[CEU][hapmap]
rs2660197	0.87[CEU][hapmap]
rs2921912	0.86[CEU][hapmap]
rs2921924	0.86[CEU][hapmap]
rs2921925	0.86[CEU][hapmap]
rs2921926	0.86[CEU][hapmap]
rs2926391	0.86[CEU][hapmap]
rs2926397	0.86[CEU][hapmap]
rs2926404	0.91[CEU][hapmap]
rs2926410	0.82[CEU][hapmap]
rs4935480	0.80[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4935481	0.80[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4935485	0.95[CEU][hapmap]
rs4935487	0.91[CEU][hapmap]
rs5003374	0.95[CEU][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6481043	0.86[CEU][hapmap]
rs6481045	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7069577	0.95[CEU][hapmap]
rs7070828	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7094237	0.80[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7095839	0.86[CEU][hapmap]
rs7476991	0.87[CEU][hapmap]
rs7893789	0.86[CEU][hapmap]
rs7904289	0.86[CEU][hapmap]
rs7910658	0.86[CEU][hapmap]
rs7912992	0.81[EUR][1000 genomes]
rs7915856	0.81[EUR][1000 genomes]
rs7920872	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv825392	chr10:55755826-55756787	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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