Variant report

Variant	rs4935480
Chromosome Location	chr10:55748206-55748207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10763039	1.00[CEU][hapmap]
rs10763043	0.94[CEU][hapmap]
rs10825183	0.89[CEU][hapmap]
rs10825184	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10825185	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10825186	0.83[CEU][hapmap]
rs10825190	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs11003969	0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11003982	0.94[CEU][hapmap]
rs11003983	0.94[CEU][hapmap]
rs11003997	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs12415408	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs16937849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1911410	0.94[CEU][hapmap]
rs1911412	0.94[CEU][hapmap]
rs1911413	0.94[CEU][hapmap]
rs1911414	0.94[CEU][hapmap]
rs1911419	0.94[CEU][hapmap]
rs2135718	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs2135720	0.94[CEU][hapmap]
rs2135721	0.89[CEU][hapmap]
rs2174716	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2446599	0.82[ASN][1000 genomes]
rs2660195	0.94[CEU][hapmap]
rs4245026	0.94[CEU][hapmap]
rs4935481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935482	0.94[CEU][hapmap]
rs6481053	0.94[CEU][hapmap]
rs7079497	0.94[CEU][hapmap]
rs7094237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900452	0.94[CEU][hapmap]
rs7920872	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55745400-55750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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