Variant report

Variant	rs11003983
Chromosome Location	chr10:55757122-55757123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55755176..55757929-chr10:55758300..55761656,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10763039	0.94[CEU][hapmap];0.91[CHB][hapmap];0.91[YRI][hapmap]
rs10763043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10825183	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[YRI][hapmap]
rs10825184	0.94[CEU][hapmap]
rs10825186	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs10825190	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11003982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11003997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415408	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16937849	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs1911375	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1911396	0.86[JPT][hapmap]
rs1911410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1911412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1911413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1911414	1.00[CEU][hapmap]
rs1911419	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs2089400	0.81[JPT][hapmap]
rs2135720	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs2135721	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[YRI][hapmap]
rs2245467	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2610830	0.87[JPT][hapmap]
rs2610862	0.90[JPT][hapmap]
rs2610869	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2610872	0.89[JPT][hapmap]
rs2660139	0.89[JPT][hapmap]
rs2660141	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2660161	0.95[JPT][hapmap]
rs2660195	0.89[CEU][hapmap]
rs4245026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4935480	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs4935481	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs4935482	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs4935485	0.83[CHB][hapmap];0.96[JPT][hapmap]
rs4935487	0.83[CHB][hapmap];0.96[JPT][hapmap]
rs5003374	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6481053	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[YRI][hapmap]
rs7069577	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs7079497	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[YRI][hapmap]
rs7094237	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs718310	0.86[JPT][hapmap]
rs7900452	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7922347	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links