Variant report

Variant	rs10825186
Chromosome Location	chr10:55754772-55754773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10763039	0.83[CEU][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs10763043	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs10825183	0.92[ASW][hapmap];0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10825184	0.83[CEU][hapmap]
rs10825190	0.88[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs11003982	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs11003983	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs11003997	0.88[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12415408	0.92[ASW][hapmap];0.88[CEU][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16937849	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs1911375	0.96[TSI][hapmap]
rs1911396	0.88[TSI][hapmap]
rs1911410	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs1911412	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs1911413	0.92[ASW][hapmap];0.88[CEU][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs1911414	0.88[CEU][hapmap]
rs1911419	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs2089400	0.88[TSI][hapmap]
rs2135720	0.88[CEU][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs2135721	0.83[CEU][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]
rs2245467	0.81[TSI][hapmap]
rs2660141	0.96[TSI][hapmap]
rs4245026	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs4935480	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs4935481	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs4935482	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs6481053	0.92[ASW][hapmap];0.88[CEU][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7079497	0.92[ASW][hapmap];0.88[CEU][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7094237	0.83[CEU][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs718310	0.92[TSI][hapmap]
rs7900452	0.88[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links