Variant report

Variant	rs2245467
Chromosome Location	chr10:55778125-55778126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10763039	0.81[TSI][hapmap]
rs10763043	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs10825183	0.81[TSI][hapmap]
rs10825186	0.81[TSI][hapmap]
rs10825190	0.86[JPT][hapmap]
rs10825196	0.95[CEU][hapmap]
rs10825197	0.95[CEU][hapmap]
rs10825198	1.00[CEU][hapmap]
rs10825203	0.91[CEU][hapmap]
rs10825217	0.82[CEU][hapmap]
rs10825218	0.91[CEU][hapmap]
rs11003982	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs11003983	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs11003997	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12415408	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap]
rs12765173	1.00[CEU][hapmap]
rs1911375	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs1911390	0.95[CEU][hapmap]
rs1911394	0.95[CEU][hapmap]
rs1911396	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1911397	0.95[CEU][hapmap]
rs1911409	0.95[CEU][hapmap]
rs1911410	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1911412	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1911413	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap]
rs2078459	0.95[CEU][hapmap]
rs2089400	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap]
rs2135720	0.81[TSI][hapmap]
rs2135721	0.81[TSI][hapmap]
rs2384372	0.91[CEU][hapmap]
rs2610830	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2610862	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2610869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2610872	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2660139	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2660141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs2660161	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3812658	0.95[CEU][hapmap]
rs4245026	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4935485	0.86[JPT][hapmap]
rs4935487	0.86[JPT][hapmap]
rs5003374	0.86[JPT][hapmap]
rs6481053	0.81[TSI][hapmap]
rs7069577	0.86[JPT][hapmap]
rs7079497	0.81[TSI][hapmap]
rs718310	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs7900452	0.91[JPT][hapmap]
rs7911734	0.91[CEU][hapmap]
rs9645505	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links