Variant report

Variant	rs2610869
Chromosome Location	chr10:55774666-55774667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10763043	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10825190	0.87[JPT][hapmap]
rs10825196	0.95[CEU][hapmap]
rs10825197	0.95[CEU][hapmap]
rs10825198	1.00[CEU][hapmap]
rs10825203	0.91[CEU][hapmap]
rs10825217	0.83[CEU][hapmap]
rs10825218	0.91[CEU][hapmap]
rs11003982	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11003983	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11003997	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs12415408	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12765173	1.00[CEU][hapmap]
rs1911375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1911390	0.95[CEU][hapmap]
rs1911394	0.95[CEU][hapmap]
rs1911396	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1911397	0.95[CEU][hapmap]
rs1911409	0.95[CEU][hapmap]
rs1911410	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1911412	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1911413	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2078459	0.95[CEU][hapmap]
rs2089400	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap]
rs2245467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2384372	0.91[CEU][hapmap]
rs2610830	0.95[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap]
rs2610862	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2610872	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2660139	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2660141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2660161	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs3812658	0.95[CEU][hapmap]
rs4245026	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4935485	0.86[JPT][hapmap]
rs4935487	0.87[JPT][hapmap]
rs5003374	0.86[JPT][hapmap]
rs7069577	0.86[JPT][hapmap]
rs718310	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7900452	0.91[JPT][hapmap]
rs7911734	0.91[CEU][hapmap]
rs9645505	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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