Variant report
| Variant | rs10825198 |
|---|---|
| Chromosome Location | chr10:55795390-55795391 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10825196 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10825197 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap] |
| rs10825203 | 0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
| rs10825217 | 0.88[CEU][hapmap] |
| rs10825218 | 0.95[CEU][hapmap] |
| rs12765173 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
| rs1911375 | 1.00[CEU][hapmap] |
| rs1911390 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap] |
| rs1911394 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap] |
| rs1911396 | 0.95[CEU][hapmap] |
| rs1911397 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap] |
| rs1911409 | 1.00[CEU][hapmap] |
| rs1911414 | 0.89[JPT][hapmap] |
| rs2078459 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs2089400 | 0.95[CEU][hapmap] |
| rs2245467 | 1.00[CEU][hapmap] |
| rs2384372 | 0.95[CEU][hapmap] |
| rs2610830 | 0.95[CEU][hapmap] |
| rs2610862 | 1.00[CEU][hapmap] |
| rs2610869 | 1.00[CEU][hapmap] |
| rs2610872 | 1.00[CEU][hapmap] |
| rs2660139 | 0.94[CEU][hapmap] |
| rs2660141 | 1.00[CEU][hapmap] |
| rs2660161 | 0.95[CEU][hapmap] |
| rs3812658 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap] |
| rs718310 | 0.95[CEU][hapmap] |
| rs7911734 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap] |
| rs9645505 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
