Variant report

Variant	rs3812658
Chromosome Location	chr10:55779915-55779916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10825196	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10825197	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10825198	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10825203	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs10825217	0.89[CEU][hapmap]
rs10825218	0.95[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs12765173	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1911375	0.95[CEU][hapmap]
rs1911390	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs1911394	0.95[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs1911396	0.91[CEU][hapmap];0.88[MEX][hapmap]
rs1911397	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs1911409	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs1911414	0.89[JPT][hapmap]
rs2078459	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2089400	0.91[CEU][hapmap];0.83[MEX][hapmap]
rs2245467	0.95[CEU][hapmap]
rs2384372	0.95[CEU][hapmap]
rs2446600	0.88[JPT][hapmap]
rs2610830	0.91[CEU][hapmap]
rs2610862	0.95[CEU][hapmap]
rs2610869	0.95[CEU][hapmap]
rs2610872	0.95[CEU][hapmap]
rs2660139	0.90[CEU][hapmap]
rs2660141	0.95[CEU][hapmap]
rs2660161	0.95[CEU][hapmap]
rs2660178	0.88[JPT][hapmap]
rs2660195	0.91[TSI][hapmap]
rs718310	0.91[CEU][hapmap];0.88[MEX][hapmap]
rs7911734	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs9645505	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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