Variant report
| Variant | rs1911414 |
|---|---|
| Chromosome Location | chr10:55757216-55757217 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:55755176..55757929-chr10:55758300..55761656,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10763039 | 0.94[CEU][hapmap] |
| rs10763043 | 1.00[CEU][hapmap] |
| rs10825183 | 0.82[CEU][hapmap] |
| rs10825184 | 0.94[CEU][hapmap];0.94[CHB][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10825186 | 0.88[CEU][hapmap] |
| rs10825190 | 1.00[CEU][hapmap] |
| rs10825196 | 0.89[JPT][hapmap] |
| rs10825197 | 0.89[JPT][hapmap] |
| rs10825198 | 0.89[JPT][hapmap] |
| rs10825203 | 0.88[JPT][hapmap] |
| rs11003982 | 1.00[CEU][hapmap] |
| rs11003983 | 1.00[CEU][hapmap] |
| rs11003997 | 1.00[CEU][hapmap] |
| rs12415408 | 1.00[CEU][hapmap] |
| rs12765173 | 0.89[JPT][hapmap] |
| rs16937849 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1911390 | 0.83[JPT][hapmap] |
| rs1911394 | 0.84[JPT][hapmap] |
| rs1911410 | 1.00[CEU][hapmap] |
| rs1911412 | 1.00[CEU][hapmap] |
| rs1911413 | 1.00[CEU][hapmap] |
| rs1911419 | 1.00[CEU][hapmap] |
| rs1911428 | 0.94[ASN][1000 genomes] |
| rs2078459 | 0.89[JPT][hapmap] |
| rs2135720 | 1.00[CEU][hapmap] |
| rs2135721 | 0.94[CEU][hapmap] |
| rs2446600 | 0.89[JPT][hapmap] |
| rs2660178 | 0.89[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2660195 | 0.89[CEU][hapmap];0.94[CHB][hapmap] |
| rs3812658 | 0.89[JPT][hapmap] |
| rs4245026 | 1.00[CEU][hapmap] |
| rs4935480 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4935481 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4935482 | 1.00[CEU][hapmap] |
| rs6481053 | 1.00[CEU][hapmap] |
| rs7079497 | 1.00[CEU][hapmap] |
| rs7094237 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs7900452 | 1.00[CEU][hapmap] |
| rs7911734 | 0.82[JPT][hapmap] |
| rs9645505 | 0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1052939 | chr10:55654719-55769239 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
