Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10763039	1.00[CEU][hapmap]
rs10763043	0.94[CEU][hapmap]
rs10825183	0.89[CEU][hapmap]
rs10825186	0.83[CEU][hapmap]
rs10825190	0.94[CEU][hapmap]
rs11003982	0.94[CEU][hapmap]
rs11003983	0.94[CEU][hapmap]
rs11003997	0.94[CEU][hapmap]
rs12415408	0.94[CEU][hapmap]
rs16937849	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1911410	0.94[CEU][hapmap]
rs1911412	0.94[CEU][hapmap]
rs1911413	0.94[CEU][hapmap]
rs1911414	0.94[CEU][hapmap];0.94[CHB][hapmap]
rs1911419	0.94[CEU][hapmap]
rs2135720	0.94[CEU][hapmap]
rs2135721	0.89[CEU][hapmap]
rs2135723	0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2660195	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2926404	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4245026	0.94[CEU][hapmap]
rs4935480	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4935481	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4935482	0.94[CEU][hapmap]
rs6481053	0.94[CEU][hapmap]
rs7079497	0.94[CEU][hapmap]
rs7094237	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7900452	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55745400-55750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: