Variant report

Variant	rs2089400
Chromosome Location	chr10:55785216-55785217
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10763039	0.88[TSI][hapmap]
rs10763043	0.81[JPT][hapmap]
rs10825183	0.88[TSI][hapmap]
rs10825186	0.88[TSI][hapmap]
rs10825190	0.86[JPT][hapmap]
rs10825196	0.90[CEU][hapmap]
rs10825197	0.90[CEU][hapmap]
rs10825198	0.95[CEU][hapmap]
rs10825203	0.86[CEU][hapmap];0.83[MEX][hapmap]
rs10825218	0.87[CEU][hapmap]
rs11003982	0.81[JPT][hapmap]
rs11003983	0.81[JPT][hapmap]
rs11003997	0.81[JPT][hapmap]
rs12415408	0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap]
rs12765173	0.95[CEU][hapmap]
rs1911375	0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap]
rs1911390	0.91[CEU][hapmap];0.83[MEX][hapmap]
rs1911394	0.90[CEU][hapmap]
rs1911396	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs1911397	0.91[CEU][hapmap];0.83[MEX][hapmap]
rs1911409	0.91[CEU][hapmap]
rs1911410	0.81[JPT][hapmap]
rs1911412	0.81[JPT][hapmap]
rs1911413	0.81[JPT][hapmap];0.88[TSI][hapmap]
rs2078459	0.91[CEU][hapmap]
rs2135720	0.88[TSI][hapmap]
rs2135721	0.84[TSI][hapmap]
rs2245467	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap]
rs2384372	0.87[CEU][hapmap]
rs2610830	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2610862	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2610869	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap]
rs2610872	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2660139	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2660141	0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap]
rs2660161	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs3812658	0.91[CEU][hapmap];0.83[MEX][hapmap]
rs4245026	0.81[JPT][hapmap]
rs4935485	0.90[JPT][hapmap]
rs4935487	0.86[JPT][hapmap]
rs5003374	0.86[JPT][hapmap]
rs6481053	0.88[TSI][hapmap]
rs7069577	0.86[JPT][hapmap]
rs7079497	0.88[TSI][hapmap]
rs7094237	0.84[TSI][hapmap]
rs718310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap]
rs7900452	0.81[JPT][hapmap]
rs7911734	0.86[CEU][hapmap];0.83[MEX][hapmap]
rs9645505	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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