Variant report

Variant	rs10825217
Chromosome Location	chr10:55835544-55835545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10825196	0.89[CEU][hapmap]
rs10825197	0.88[CEU][hapmap]
rs10825198	0.88[CEU][hapmap]
rs10825203	0.83[CEU][hapmap]
rs10825218	0.84[CEU][hapmap]
rs12573018	0.83[ASN][1000 genomes]
rs12765173	0.88[CEU][hapmap]
rs1911375	0.82[CEU][hapmap]
rs1911390	0.89[CEU][hapmap]
rs1911394	0.82[CEU][hapmap]
rs1911397	0.89[CEU][hapmap]
rs1911409	0.89[CEU][hapmap]
rs2078459	0.89[CEU][hapmap]
rs2245467	0.82[CEU][hapmap]
rs2384372	0.84[CEU][hapmap]
rs2610869	0.83[CEU][hapmap]
rs2610872	0.81[CEU][hapmap]
rs2660141	0.82[CEU][hapmap]
rs2660161	0.81[CEU][hapmap]
rs3812658	0.89[CEU][hapmap]
rs7911734	0.82[CEU][hapmap]
rs9645505	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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