Variant report

Variant	rs2166621
Chromosome Location	chr10:55710285-55710286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10740557	0.87[EUR][1000 genomes]
rs10740558	0.89[EUR][1000 genomes]
rs10740559	0.89[EUR][1000 genomes]
rs10763019	0.88[EUR][1000 genomes]
rs10763020	0.88[EUR][1000 genomes]
rs10763021	0.88[EUR][1000 genomes]
rs10763022	0.88[EUR][1000 genomes]
rs10763024	0.89[EUR][1000 genomes]
rs10763025	0.89[EUR][1000 genomes]
rs10763027	0.89[EUR][1000 genomes]
rs10763028	0.90[EUR][1000 genomes]
rs10825155	0.88[EUR][1000 genomes]
rs10825156	0.88[EUR][1000 genomes]
rs10825157	0.88[EUR][1000 genomes]
rs10825159	0.88[EUR][1000 genomes]
rs10825161	0.89[EUR][1000 genomes]
rs12570313	0.95[ASN][1000 genomes]
rs12571668	0.94[ASN][1000 genomes]
rs12571882	0.85[ASN][1000 genomes]
rs12572470	0.95[ASN][1000 genomes]
rs1900421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900422	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1900423	0.91[EUR][1000 genomes]
rs1900446	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1900449	0.90[EUR][1000 genomes]
rs1900450	0.88[EUR][1000 genomes]
rs1900451	0.90[EUR][1000 genomes]
rs1900458	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900459	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2121525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2135717	0.88[EUR][1000 genomes]
rs2166620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2166627	0.82[EUR][1000 genomes]
rs2166628	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2246768	0.88[EUR][1000 genomes]
rs2384327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2384332	0.89[EUR][1000 genomes]
rs2384333	0.90[EUR][1000 genomes]
rs2384334	0.88[EUR][1000 genomes]
rs2384343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2446609	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2456701	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593103	0.89[EUR][1000 genomes]
rs2593105	0.89[EUR][1000 genomes]
rs2593107	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593119	0.89[EUR][1000 genomes]
rs2593120	0.88[EUR][1000 genomes]
rs2593122	0.88[EUR][1000 genomes]
rs2593124	0.89[EUR][1000 genomes]
rs2593129	0.93[EUR][1000 genomes]
rs2593131	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2593138	0.89[EUR][1000 genomes]
rs2593139	0.90[EUR][1000 genomes]
rs2593140	0.90[EUR][1000 genomes]
rs2610823	0.85[EUR][1000 genomes]
rs2610857	0.90[EUR][1000 genomes]
rs2610906	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2610919	0.81[EUR][1000 genomes]
rs2660188	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660190	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660192	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2921924	0.89[EUR][1000 genomes]
rs2926396	0.90[EUR][1000 genomes]
rs2926398	0.90[EUR][1000 genomes]
rs2926399	0.89[EUR][1000 genomes]
rs2926408	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4427480	0.90[EUR][1000 genomes]
rs6481045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7071158	0.85[EUR][1000 genomes]
rs7087311	0.83[EUR][1000 genomes]
rs7089258	0.90[EUR][1000 genomes]
rs7089762	0.89[EUR][1000 genomes]
rs7093596	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7095839	0.89[EUR][1000 genomes]
rs7910658	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7911482	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7912992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55706600-55710400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links