Variant report

Variant	rs11598849
Chromosome Location	chr10:55770929-55770930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509004	0.82[CHB][hapmap]
rs10825215	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs11004028	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11004031	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11004032	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11004034	0.82[CHB][hapmap]
rs11004035	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11004036	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11004037	0.82[CHB][hapmap]
rs11004060	0.82[CHB][hapmap]
rs11591621	0.82[CHB][hapmap]
rs11593843	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11594112	0.82[CHB][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594564	0.82[CHB][hapmap]
rs11594638	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11595991	0.82[CHB][hapmap]
rs11597275	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11597389	0.82[CHB][hapmap]
rs11598843	0.82[CHB][hapmap]
rs11599859	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs12242499	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12244555	0.82[CHB][hapmap]
rs12247878	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12250681	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12255282	0.85[CEU][hapmap]
rs12256879	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs12256947	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12257012	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12257494	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs16937895	0.82[CHB][hapmap]
rs16937899	0.82[CHB][hapmap]
rs17636887	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17643506	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs17643564	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs17644196	0.82[CHB][hapmap]
rs17644321	0.82[CHB][hapmap]
rs17711275	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs17711455	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs1911379	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1911402	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1911420	1.00[ASW][hapmap];0.91[CHD][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap]
rs2135715	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2610873	0.81[CEU][hapmap]
rs2610893	0.92[MKK][hapmap]
rs2660150	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2660151	0.81[CEU][hapmap]
rs2660152	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2660154	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2660159	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs3812657	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs7097777	0.82[CHB][hapmap]
rs7898152	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11598849	PCDH15	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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