Variant report

Variant	rs16937895
Chromosome Location	chr10:55850935-55850936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509004	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825215	0.85[CHB][hapmap]
rs11004028	1.00[CHB][hapmap]
rs11004031	0.85[CHB][hapmap]
rs11004032	0.85[CHB][hapmap]
rs11004034	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs11004035	0.85[CHB][hapmap]
rs11004036	0.85[CHB][hapmap]
rs11004037	0.85[CHB][hapmap]
rs11004060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11591621	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11593843	0.85[CHB][hapmap]
rs11594564	1.00[CHB][hapmap]
rs11594638	0.85[CHB][hapmap]
rs11595991	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597389	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11598849	0.82[CHB][hapmap]
rs11599859	0.85[CHB][hapmap]
rs12242499	1.00[CHB][hapmap]
rs12244555	0.85[CHB][hapmap]
rs12247878	0.85[CHB][hapmap]
rs12250681	0.85[CHB][hapmap]
rs12256879	0.85[CHB][hapmap]
rs12256947	0.85[CHB][hapmap]
rs12257012	0.85[CHB][hapmap]
rs12257494	1.00[CHB][hapmap]
rs16937899	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17636887	0.82[CHB][hapmap]
rs17643506	0.85[CHB][hapmap]
rs17643564	1.00[CHB][hapmap]
rs17644196	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17644321	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17711275	0.85[CHB][hapmap]
rs17711455	0.85[CHB][hapmap]
rs1911379	0.85[CHB][hapmap]
rs1911402	1.00[CHB][hapmap]
rs2135715	0.85[CHB][hapmap]
rs2610873	0.85[CHB][hapmap]
rs2660150	0.85[CHB][hapmap]
rs2660151	0.82[CHB][hapmap]
rs2660152	1.00[CHB][hapmap]
rs2660154	1.00[CHB][hapmap]
rs2660159	0.85[CHB][hapmap]
rs3812657	1.00[CHB][hapmap]
rs7097777	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72797020	0.81[EUR][1000 genomes]
rs72797021	0.81[EUR][1000 genomes]
rs72797022	0.82[EUR][1000 genomes]
rs72797023	0.82[EUR][1000 genomes]
rs7898152	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links