Variant report

Variant	rs1911402
Chromosome Location	chr10:55801554-55801555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10509004	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10825215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004027	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11004028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004029	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004030	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004034	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004058	0.80[EUR][1000 genomes]
rs11004060	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs11591621	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs11593843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11594564	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs11594638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595991	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11597275	0.81[CEU][hapmap]
rs11597389	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs11598849	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap]
rs11599859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12242499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs12243005	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244759	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12250607	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251985	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252125	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252197	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253866	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255282	1.00[CEU][hapmap]
rs12256879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12256947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257312	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257494	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258948	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16913805	0.80[CEU][hapmap]
rs16937895	1.00[CHB][hapmap]
rs16937899	1.00[CHB][hapmap]
rs17636887	0.85[CEU][hapmap];0.82[CHB][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs17643506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17643564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs17644196	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17644321	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs17711275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17711455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1911379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911401	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs2135715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2610873	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2660150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2660151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2660152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs2660154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2660159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28701623	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097777	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs72794984	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797006	0.80[EUR][1000 genomes]
rs72797009	0.80[AMR][1000 genomes]
rs72797010	0.80[AMR][1000 genomes]
rs72797011	0.80[AMR][1000 genomes]
rs72797012	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72797015	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7898152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links