Variant report

Variant	rs16913805
Chromosome Location	chr10:55844395-55844396
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10825215	0.81[CEU][hapmap]
rs10825219	0.82[YRI][hapmap]
rs10825223	0.86[YRI][hapmap]
rs11004028	0.80[CEU][hapmap]
rs11004031	0.81[CEU][hapmap]
rs11004032	0.82[CEU][hapmap]
rs11004034	0.86[CEU][hapmap]
rs11004035	0.82[CEU][hapmap]
rs11004036	0.82[CEU][hapmap]
rs11004037	0.84[CEU][hapmap]
rs11004039	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs11004058	0.82[EUR][1000 genomes]
rs11004060	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11591621	0.90[YRI][hapmap]
rs11594564	0.85[CEU][hapmap]
rs11595991	0.93[YRI][hapmap]
rs11597389	0.91[YRI][hapmap]
rs12242499	0.80[CEU][hapmap]
rs12247878	0.82[CEU][hapmap]
rs12255282	0.85[CEU][hapmap]
rs12256879	0.80[CEU][hapmap]
rs12256947	0.82[CEU][hapmap]
rs12257012	0.82[CEU][hapmap]
rs12257494	0.80[CEU][hapmap]
rs16937890	0.85[YRI][hapmap]
rs17643564	0.80[CEU][hapmap]
rs17644196	0.86[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17644321	0.91[YRI][hapmap]
rs17711275	0.82[CEU][hapmap]
rs17711455	0.81[CEU][hapmap]
rs1911402	0.80[CEU][hapmap]
rs2135715	0.82[CEU][hapmap]
rs2660152	0.80[CEU][hapmap]
rs2660154	0.80[CEU][hapmap]
rs3812657	0.80[CEU][hapmap]
rs61858409	0.82[ASN][1000 genomes]
rs61858410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797006	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72797007	0.97[AFR][1000 genomes]
rs72797008	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72797009	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72797010	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72797011	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72797012	0.86[AFR][1000 genomes]
rs72797015	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72797021	0.87[AFR][1000 genomes]
rs72797022	0.87[AFR][1000 genomes]
rs7898152	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55841400-55847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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