Variant report

Variant	rs1911401
Chromosome Location	chr10:55801408-55801409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10825215	0.82[CHB][hapmap]
rs11004027	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11004028	0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004029	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004030	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004031	0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004032	0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004034	0.82[CHB][hapmap]
rs11004035	0.82[CHB][hapmap]
rs11004036	0.82[CHB][hapmap]
rs11004037	0.82[CHB][hapmap]
rs11004058	0.80[EUR][1000 genomes]
rs11004060	0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs11591621	0.82[CHB][hapmap]
rs11593843	0.82[CHB][hapmap]
rs11594564	0.82[CHB][hapmap]
rs11594638	0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597389	0.82[CHB][hapmap]
rs11599859	0.82[CHB][hapmap]
rs12242499	0.82[CHB][hapmap]
rs12243005	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244555	0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244759	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247878	0.82[CHB][hapmap]
rs12250607	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250681	0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251985	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252125	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252197	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253866	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256879	0.82[CHB][hapmap]
rs12256947	0.82[CHB][hapmap]
rs12257012	0.82[CHB][hapmap]
rs12257312	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257494	0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258948	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17643506	0.82[CHB][hapmap]
rs17643564	0.82[CHB][hapmap]
rs17644196	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17644321	0.82[CHB][hapmap]
rs17711275	0.82[CHB][hapmap]
rs17711455	0.82[CHB][hapmap]
rs1911379	0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911402	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs2135715	0.82[CHB][hapmap]
rs2660150	0.82[CHB][hapmap]
rs2660152	0.82[CHB][hapmap]
rs2660154	0.82[CHB][hapmap]
rs2660159	0.82[CHB][hapmap]
rs28701623	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812657	0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794984	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797006	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72797008	0.80[AMR][1000 genomes]
rs72797009	0.83[AMR][1000 genomes]
rs72797010	0.83[AMR][1000 genomes]
rs72797011	0.83[AMR][1000 genomes]
rs72797012	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72797015	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7898152	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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