Variant report

Variant	rs17704703
Chromosome Location	chr10:55566406-55566407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509002	1.00[CHB][hapmap]
rs10740559	1.00[ASN][1000 genomes]
rs10763028	1.00[ASN][1000 genomes]
rs10825138	1.00[CHB][hapmap]
rs10825161	1.00[ASN][1000 genomes]
rs11003889	1.00[CHB][hapmap];0.81[GIH][hapmap]
rs11003893	1.00[CHB][hapmap]
rs11812585	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900416	0.84[CEU][hapmap];0.92[GIH][hapmap]
rs1900423	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900449	1.00[ASN][1000 genomes]
rs1900450	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900451	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900453	1.00[CHB][hapmap]
rs2384332	1.00[ASN][1000 genomes]
rs2384333	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2384334	1.00[ASN][1000 genomes]
rs2384340	1.00[CHB][hapmap]
rs2456699	1.00[CHB][hapmap]
rs2593103	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593105	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593119	1.00[ASN][1000 genomes]
rs2593120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593122	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593124	1.00[ASN][1000 genomes]
rs2593129	1.00[CHB][hapmap]
rs2593138	1.00[ASN][1000 genomes]
rs2593139	1.00[ASN][1000 genomes]
rs2593140	1.00[ASN][1000 genomes]
rs2610837	1.00[CHB][hapmap]
rs2610847	1.00[CHB][hapmap]
rs2610857	1.00[ASN][1000 genomes]
rs2610909	1.00[CHB][hapmap]
rs2610910	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2610919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921924	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921925	1.00[CHB][hapmap]
rs2926396	1.00[ASN][1000 genomes]
rs2926398	1.00[ASN][1000 genomes]
rs4427480	1.00[ASN][1000 genomes]
rs61858296	1.00[ASN][1000 genomes]
rs7089258	1.00[ASN][1000 genomes]
rs7089762	1.00[ASN][1000 genomes]
rs7095839	1.00[CHB][hapmap]
rs7476991	1.00[CHB][hapmap]
rs7893789	1.00[CHB][hapmap]
rs7904289	1.00[CHB][hapmap]
rs7910658	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv895410	chr10:55385962-55577022	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv428556	chr10:55413202-55586930	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1051273	chr10:55551887-55577543	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1052057	chr10:55551887-55581651	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1042430	chr10:55558890-55581651	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17704703	DKK1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55562400-55568600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55566400-55566800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:55566400-55566800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:55566400-55567000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links