Variant report

Variant	rs11003889
Chromosome Location	chr10:55623229-55623230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509002	1.00[CHB][hapmap]
rs10740559	1.00[ASN][1000 genomes]
rs10763028	1.00[ASN][1000 genomes]
rs10825138	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs10825161	1.00[ASN][1000 genomes]
rs11003893	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs11812585	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17704703	1.00[ASN][1000 genomes]
rs1900416	0.94[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs1900423	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900449	1.00[ASN][1000 genomes]
rs1900450	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900451	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900453	1.00[CHB][hapmap]
rs2384332	1.00[ASN][1000 genomes]
rs2384333	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2384334	1.00[ASN][1000 genomes]
rs2384340	1.00[CHB][hapmap]
rs2456699	1.00[CHB][hapmap]
rs2593103	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593105	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593119	1.00[ASN][1000 genomes]
rs2593120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593122	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593124	1.00[ASN][1000 genomes]
rs2593129	1.00[CHB][hapmap]
rs2593138	1.00[ASN][1000 genomes]
rs2593139	1.00[ASN][1000 genomes]
rs2593140	1.00[ASN][1000 genomes]
rs2610837	1.00[CHB][hapmap]
rs2610847	1.00[CHB][hapmap]
rs2610857	1.00[ASN][1000 genomes]
rs2610909	1.00[CHB][hapmap]
rs2610910	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2610919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921924	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921925	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs2926396	1.00[ASN][1000 genomes]
rs2926398	1.00[ASN][1000 genomes]
rs4427480	1.00[ASN][1000 genomes]
rs61858294	0.92[EUR][1000 genomes]
rs61858296	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089258	1.00[ASN][1000 genomes]
rs7089762	1.00[ASN][1000 genomes]
rs7095839	1.00[CHB][hapmap]
rs72793175	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7476991	1.00[CHB][hapmap]
rs7893789	1.00[CHB][hapmap]
rs7904289	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7910658	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11003889	DKK1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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