Variant report

Variant	rs11812585
Chromosome Location	chr10:55602982-55602983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55595339..55599244-chr10:55601413..55603952,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509002	1.00[CHB][hapmap]
rs10740559	1.00[ASN][1000 genomes]
rs10763028	1.00[ASN][1000 genomes]
rs10825138	1.00[CHB][hapmap]
rs10825161	1.00[ASN][1000 genomes]
rs11003889	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs11003893	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17704703	1.00[ASN][1000 genomes]
rs1900416	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1900423	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900449	1.00[ASN][1000 genomes]
rs1900450	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900451	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1900453	1.00[CHB][hapmap]
rs2384332	1.00[ASN][1000 genomes]
rs2384333	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2384334	1.00[ASN][1000 genomes]
rs2384340	1.00[CHB][hapmap]
rs2456699	1.00[CHB][hapmap]
rs2593103	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593105	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593119	1.00[ASN][1000 genomes]
rs2593120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593122	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2593124	1.00[ASN][1000 genomes]
rs2593129	1.00[CHB][hapmap]
rs2593138	1.00[ASN][1000 genomes]
rs2593139	1.00[ASN][1000 genomes]
rs2593140	1.00[ASN][1000 genomes]
rs2610837	1.00[CHB][hapmap]
rs2610847	1.00[CHB][hapmap]
rs2610857	1.00[ASN][1000 genomes]
rs2610909	1.00[CHB][hapmap]
rs2610910	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2610919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921924	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2921925	1.00[CHB][hapmap]
rs2926396	1.00[ASN][1000 genomes]
rs2926398	1.00[ASN][1000 genomes]
rs4427480	1.00[ASN][1000 genomes]
rs61858294	0.98[EUR][1000 genomes]
rs61858296	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089258	1.00[ASN][1000 genomes]
rs7089762	1.00[ASN][1000 genomes]
rs7095839	1.00[CHB][hapmap]
rs72793175	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7476991	1.00[CHB][hapmap]
rs7893789	1.00[CHB][hapmap]
rs7904289	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs7910658	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55599800-55603600	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:55600000-55603800	Weak transcription	Fetal Lung	lung
3	chr10:55600000-55604000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:55602600-55603000	Enhancers	Brain Substantia Nigra	brain
5	chr10:55602600-55603600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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