Variant report
| Variant | rs61858296 |
|---|---|
| Chromosome Location | chr10:55602133-55602134 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:55595339..55599244-chr10:55601413..55603952,3 | K562 | blood: | |
| 2 | 10:55597627-55602376..10:55810019-55812112 | H1-hESC | embryonic stem cell: | embryo |
| 3 | 10:55597627-55602376..10:55882057-55892580 | GM12878 | blood: | |
| 4 | 10:55597627-55602376..10:55892580-55896204 | H1-hESC | embryonic stem cell: | embryo |
| 5 | 10:55597627-55602376..10:55871238-55872736 | GM12878 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10740559 | 1.00[ASN][1000 genomes] |
| rs10763028 | 1.00[ASN][1000 genomes] |
| rs10825161 | 1.00[ASN][1000 genomes] |
| rs11812585 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17704703 | 1.00[ASN][1000 genomes] |
| rs1900416 | 0.95[EUR][1000 genomes] |
| rs1900423 | 1.00[ASN][1000 genomes] |
| rs1900449 | 1.00[ASN][1000 genomes] |
| rs1900450 | 1.00[ASN][1000 genomes] |
| rs1900451 | 1.00[ASN][1000 genomes] |
| rs2384332 | 1.00[ASN][1000 genomes] |
| rs2384333 | 1.00[ASN][1000 genomes] |
| rs2384334 | 1.00[ASN][1000 genomes] |
| rs2593103 | 1.00[ASN][1000 genomes] |
| rs2593105 | 1.00[ASN][1000 genomes] |
| rs2593119 | 1.00[ASN][1000 genomes] |
| rs2593120 | 1.00[ASN][1000 genomes] |
| rs2593122 | 1.00[ASN][1000 genomes] |
| rs2593124 | 1.00[ASN][1000 genomes] |
| rs2593138 | 1.00[ASN][1000 genomes] |
| rs2593139 | 1.00[ASN][1000 genomes] |
| rs2593140 | 1.00[ASN][1000 genomes] |
| rs2610857 | 1.00[ASN][1000 genomes] |
| rs2610910 | 1.00[ASN][1000 genomes] |
| rs2610919 | 1.00[ASN][1000 genomes] |
| rs2921924 | 1.00[ASN][1000 genomes] |
| rs2926396 | 1.00[ASN][1000 genomes] |
| rs2926398 | 1.00[ASN][1000 genomes] |
| rs4427480 | 1.00[ASN][1000 genomes] |
| rs61858294 | 0.97[EUR][1000 genomes] |
| rs7089258 | 1.00[ASN][1000 genomes] |
| rs7089762 | 1.00[ASN][1000 genomes] |
| rs72793175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7910658 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1847684 | chr10:55371601-55638740 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv1842975 | chr10:55378668-55736655 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv895429 | chr10:55564355-55736655 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:55599800-55603600 | Weak transcription | Brain Hippocampus Middle | brain |
| 2 | chr10:55600000-55603800 | Weak transcription | Fetal Lung | lung |
| 3 | chr10:55600000-55604000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 4 | chr10:55602000-55602600 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
