Variant report

Variant	rs2610821
Chromosome Location	chr10:55655675-55655676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10509001	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740557	0.98[ASN][1000 genomes]
rs10740558	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10763019	0.98[ASN][1000 genomes]
rs10763020	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10763021	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10763022	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10763024	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10763025	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10763027	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10825155	0.98[ASN][1000 genomes]
rs10825156	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10825157	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10825159	0.93[ASN][1000 genomes]
rs11003895	0.81[CHB][hapmap]
rs11003896	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11003897	1.00[CHB][hapmap]
rs11003901	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003909	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs11003918	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11003919	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11003922	0.85[ASN][1000 genomes]
rs11003932	0.81[ASN][1000 genomes]
rs11003945	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003994	0.81[JPT][hapmap]
rs12217383	0.86[CHB][hapmap]
rs12218632	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16937805	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16937807	1.00[CHB][hapmap]
rs16937812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16937823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1900456	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384328	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2593106	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2593121	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2593123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2610822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2610823	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2610912	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2926390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2926391	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs2926410	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs56128987	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61067206	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61347407	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6481043	0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55654200-55658400	Weak transcription	Fetal Intestine Small	intestine

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