Variant report

Variant	rs11003994
Chromosome Location	chr10:55764534-55764535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10509001	0.81[JPT][hapmap]
rs10740558	0.81[JPT][hapmap]
rs10763020	0.81[JPT][hapmap]
rs10763021	0.81[JPT][hapmap]
rs10763022	0.81[JPT][hapmap]
rs10763024	0.81[JPT][hapmap]
rs10763025	0.81[JPT][hapmap]
rs10763027	0.81[JPT][hapmap]
rs10825156	0.81[JPT][hapmap]
rs10825157	0.81[JPT][hapmap]
rs11003901	0.81[JPT][hapmap]
rs11003919	0.80[JPT][hapmap]
rs11003920	0.81[JPT][hapmap]
rs11003945	0.81[JPT][hapmap]
rs11003974	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003975	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003985	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12217383	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12218632	0.81[JPT][hapmap]
rs12220450	1.00[JPT][hapmap]
rs16937805	0.81[JPT][hapmap]
rs16937812	0.81[JPT][hapmap]
rs16937823	0.81[JPT][hapmap]
rs16937855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1900456	0.81[JPT][hapmap]
rs2593106	0.80[JPT][hapmap]
rs2610821	0.81[JPT][hapmap]
rs2610822	0.81[JPT][hapmap]
rs2610823	0.81[JPT][hapmap]
rs2610898	1.00[JPT][hapmap]
rs2610912	0.81[JPT][hapmap]
rs2660175	1.00[JPT][hapmap]
rs2926390	0.81[JPT][hapmap]
rs2926410	0.81[JPT][hapmap]
rs6481043	0.81[JPT][hapmap]
rs7077514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74134958	0.86[AMR][1000 genomes]
rs7917046	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7918590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7921174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8181397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55764400-55765200	Enhancers	HepG2	liver

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