Variant report
| Variant | rs12217383 |
|---|---|
| Chromosome Location | chr10:55735930-55735931 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10509001 | 0.86[CHB][hapmap] |
| rs10825157 | 0.85[CHD][hapmap] |
| rs11003896 | 0.86[CHB][hapmap] |
| rs11003897 | 0.83[CHB][hapmap] |
| rs11003901 | 0.86[CHB][hapmap] |
| rs11003920 | 0.86[CHB][hapmap] |
| rs11003945 | 0.86[CHB][hapmap] |
| rs11003974 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs11003975 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs11003985 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs11003992 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs11003994 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs11003995 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs12218632 | 0.86[CHB][hapmap] |
| rs12220450 | 0.91[ASW][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap] |
| rs16937805 | 0.86[CHB][hapmap];0.80[CHD][hapmap] |
| rs16937807 | 0.83[CHB][hapmap] |
| rs16937812 | 0.86[CHB][hapmap] |
| rs16937823 | 0.86[CHB][hapmap] |
| rs16937855 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs16937871 | 1.00[MEX][hapmap] |
| rs16937873 | 1.00[MEX][hapmap] |
| rs1900456 | 0.86[CHB][hapmap] |
| rs2593123 | 0.85[CHB][hapmap] |
| rs2610821 | 0.86[CHB][hapmap] |
| rs2610822 | 0.86[CHB][hapmap];0.85[CHD][hapmap] |
| rs2610898 | 1.00[JPT][hapmap] |
| rs2660175 | 1.00[JPT][hapmap] |
| rs2926390 | 0.86[CHB][hapmap];0.85[CHD][hapmap] |
| rs7077514 | 0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes] |
| rs7917046 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs7918590 | 0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs7921174 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs8181397 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1842975 | chr10:55378668-55736655 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv895429 | chr10:55564355-55736655 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv895430 | chr10:55645953-55736655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1052939 | chr10:55654719-55769239 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
