Variant report
| Variant | rs16937873 |
|---|---|
| Chromosome Location | chr10:55801874-55801875 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs12217383 | 1.00[MEX][hapmap] |
| rs12220450 | 1.00[MEX][hapmap] |
| rs16937871 | 1.00[MEX][hapmap] |
| rs57385317 | 0.93[AMR][1000 genomes] |
| rs7077514 | 1.00[MEX][hapmap];0.86[AMR][1000 genomes] |
| rs74134957 | 0.81[AMR][1000 genomes] |
| rs74134958 | 0.93[AMR][1000 genomes] |
| rs74134959 | 0.87[AMR][1000 genomes] |
| rs7918590 | 1.00[MEX][hapmap] |
| rs8181397 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
