Variant report

Variant	rs7077514
Chromosome Location	chr10:55746740-55746741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10825157	0.80[CHD][hapmap]
rs11003974	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11003975	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11003985	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11003992	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11003993	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11003994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11003995	0.93[ASW][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12217383	0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12220450	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16937855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16937871	1.00[MEX][hapmap]
rs16937873	1.00[MEX][hapmap]
rs2610822	0.80[CHD][hapmap]
rs2610898	1.00[JPT][hapmap]
rs2660175	1.00[JPT][hapmap]
rs2926390	0.80[CHD][hapmap]
rs57385317	0.81[AMR][1000 genomes]
rs74134957	0.81[AMR][1000 genomes]
rs74134958	0.93[AMR][1000 genomes]
rs74134959	0.86[AMR][1000 genomes]
rs7917046	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7918590	0.94[ASW][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7921174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs8181397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55745400-55750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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