Variant report

Variant	rs7083009
Chromosome Location	chr10:55650634-55650635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10740557	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10740558	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10740559	0.91[EUR][1000 genomes]
rs10763016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763019	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763020	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763021	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763022	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763024	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763025	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763027	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10763028	0.90[EUR][1000 genomes]
rs10825138	0.84[CEU][hapmap]
rs10825147	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825148	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825149	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10825154	0.89[JPT][hapmap]
rs10825155	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10825156	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10825157	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10825159	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10825161	0.89[EUR][1000 genomes]
rs10825168	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs11003893	0.84[CEU][hapmap]
rs11003898	0.92[CEU][hapmap]
rs11003902	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs11003908	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11003918	0.83[CEU][hapmap]
rs11003919	0.84[CEU][hapmap]
rs11003924	0.88[JPT][hapmap]
rs11003925	0.88[JPT][hapmap]
rs11003927	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs16937840	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1900414	0.84[JPT][hapmap]
rs1900421	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1900422	0.84[EUR][1000 genomes]
rs1900423	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs1900424	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1900425	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1900426	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs1900427	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1900449	0.90[EUR][1000 genomes]
rs1900450	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs1900451	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs1900453	0.83[CEU][hapmap]
rs1900458	0.85[EUR][1000 genomes]
rs1900459	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs1911427	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2069216	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2069217	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2121525	0.85[EUR][1000 genomes]
rs2135723	0.81[CEU][hapmap]
rs2166620	0.85[EUR][1000 genomes]
rs2166621	0.85[EUR][1000 genomes]
rs2166628	0.83[EUR][1000 genomes]
rs2246768	0.83[EUR][1000 genomes]
rs2384327	0.83[EUR][1000 genomes]
rs2384328	0.84[CEU][hapmap]
rs2384332	0.90[EUR][1000 genomes]
rs2384333	0.90[EUR][1000 genomes]
rs2384334	0.88[EUR][1000 genomes]
rs2384340	0.84[CEU][hapmap]
rs2384343	0.85[EUR][1000 genomes]
rs2593103	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs2593105	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs2593106	0.84[CEU][hapmap]
rs2593119	0.92[EUR][1000 genomes]
rs2593120	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs2593122	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs2593123	0.84[CEU][hapmap]
rs2593124	0.91[EUR][1000 genomes]
rs2593129	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs2593138	0.91[EUR][1000 genomes]
rs2593139	0.90[EUR][1000 genomes]
rs2593140	0.90[EUR][1000 genomes]
rs2610823	0.84[CEU][hapmap];0.95[EUR][1000 genomes]
rs2610846	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2610857	0.90[EUR][1000 genomes]
rs2610893	0.84[CEU][hapmap]
rs2610912	0.84[CEU][hapmap]
rs2610919	0.84[CEU][hapmap]
rs2921912	0.84[CEU][hapmap]
rs2921922	0.81[JPT][hapmap]
rs2921923	0.82[JPT][hapmap]
rs2921924	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs2921925	0.84[CEU][hapmap]
rs2921926	0.84[CEU][hapmap]
rs2926391	0.84[CEU][hapmap]
rs2926396	0.85[EUR][1000 genomes]
rs2926397	0.84[CEU][hapmap]
rs2926398	0.90[EUR][1000 genomes]
rs2926399	0.89[EUR][1000 genomes]
rs2926410	0.81[CEU][hapmap]
rs2926411	0.84[JPT][hapmap]
rs41487044	0.86[ASN][1000 genomes]
rs4287256	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs4364970	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs4376818	0.92[CEU][hapmap]
rs4427480	0.90[EUR][1000 genomes]
rs4466737	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs4478892	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4478893	0.92[CEU][hapmap]
rs4488105	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs4488106	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs4586053	0.92[CEU][hapmap];0.90[CHB][hapmap];0.83[YRI][hapmap]
rs6481043	0.84[CEU][hapmap]
rs6481045	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7071158	0.86[EUR][1000 genomes]
rs7073930	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7087311	0.84[EUR][1000 genomes]
rs7089258	0.89[EUR][1000 genomes]
rs7089762	0.89[EUR][1000 genomes]
rs7091282	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs7095839	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs7097365	0.92[CEU][hapmap]
rs7893789	0.84[CEU][hapmap]
rs7898068	0.84[JPT][hapmap]
rs7904289	0.84[CEU][hapmap]
rs7905665	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7905801	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7910658	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs7912992	0.85[EUR][1000 genomes]
rs7915856	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links