Variant report

Variant	rs10825154
Chromosome Location	chr10:55654401-55654402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10763016	0.89[JPT][hapmap]
rs10763029	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10763031	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs10825139	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[YRI][hapmap]
rs10825147	0.89[JPT][hapmap]
rs10825148	0.89[JPT][hapmap]
rs10825149	0.89[JPT][hapmap]
rs10825150	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10825158	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10825164	0.88[EUR][1000 genomes]
rs10825166	0.80[JPT][hapmap]
rs10825168	0.88[JPT][hapmap]
rs10825169	0.84[CEU][hapmap]
rs11003908	0.94[JPT][hapmap]
rs11003917	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[YRI][hapmap]
rs11003924	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs11003925	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs11003927	0.88[JPT][hapmap]
rs16937840	0.83[JPT][hapmap]
rs1900414	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1900425	0.94[JPT][hapmap]
rs1900427	0.94[JPT][hapmap]
rs1900437	0.93[CEU][hapmap]
rs1900438	0.84[CEU][hapmap];0.91[YRI][hapmap]
rs1911427	0.82[JPT][hapmap]
rs2069217	0.83[JPT][hapmap]
rs2121524	0.87[EUR][1000 genomes]
rs2384337	0.85[CEU][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs2593126	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2610846	0.83[JPT][hapmap]
rs2921922	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2921923	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2926411	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs34989793	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4478892	0.94[JPT][hapmap]
rs4628594	1.00[CEU][hapmap]
rs7067725	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7083009	0.89[JPT][hapmap]
rs7088140	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7089225	0.88[EUR][1000 genomes]
rs7090681	0.85[CEU][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes]
rs7101001	0.87[EUR][1000 genomes]
rs7894095	0.89[EUR][1000 genomes]
rs7898068	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7905665	0.94[JPT][hapmap]
rs7905801	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55654000-55654600	Enhancers	HepG2	liver
2	chr10:55654000-55655000	Enhancers	Stomach Smooth Muscle	stomach
3	chr10:55654200-55658400	Weak transcription	Fetal Intestine Small	intestine

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