Variant report

Variant	rs1900437
Chromosome Location	chr10:55629660-55629661
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10825134	1.00[JPT][hapmap]
rs10825139	0.93[CEU][hapmap]
rs10825148	0.84[CEU][hapmap]
rs10825150	0.96[CEU][hapmap]
rs10825154	0.93[CEU][hapmap]
rs10825169	0.81[CEU][hapmap]
rs11003898	0.82[CEU][hapmap]
rs11003902	0.82[CEU][hapmap]
rs11003917	0.93[CEU][hapmap]
rs12258253	1.00[JPT][hapmap]
rs1900414	0.86[CEU][hapmap]
rs1900417	1.00[JPT][hapmap]
rs1900424	0.82[CEU][hapmap]
rs1900425	0.81[CEU][hapmap]
rs1900426	0.82[CEU][hapmap]
rs1900427	0.81[CEU][hapmap]
rs1900438	0.81[CEU][hapmap]
rs2593129	0.81[CEU][hapmap]
rs2921922	0.86[CEU][hapmap]
rs2921923	0.89[CEU][hapmap]
rs2926411	0.86[CEU][hapmap]
rs4287256	0.82[CEU][hapmap]
rs4310525	0.86[JPT][hapmap]
rs4364970	0.82[CEU][hapmap]
rs4376818	0.82[CEU][hapmap]
rs4466737	0.82[CEU][hapmap]
rs4478892	0.81[CEU][hapmap]
rs4478893	0.81[CEU][hapmap]
rs4488105	0.81[CEU][hapmap]
rs4488106	0.81[CEU][hapmap]
rs4586053	0.82[CEU][hapmap]
rs4628594	0.92[CEU][hapmap]
rs7067725	0.86[CEU][hapmap]
rs7073930	0.82[CEU][hapmap]
rs7088140	0.84[CEU][hapmap]
rs7091282	0.82[CEU][hapmap]
rs7097365	0.81[CEU][hapmap]
rs7898068	0.86[CEU][hapmap]
rs7905665	0.82[CEU][hapmap]
rs7905801	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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