Variant report

Variant	rs10825139
Chromosome Location	chr10:55635257-55635258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10763029	0.85[CEU][hapmap]
rs10763031	0.85[CEU][hapmap]
rs10825150	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10825154	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes]
rs10825169	0.84[CEU][hapmap]
rs11003917	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1900414	0.93[CEU][hapmap];0.82[YRI][hapmap]
rs1900437	0.93[CEU][hapmap]
rs1900438	0.84[CEU][hapmap]
rs2384337	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs2921922	0.93[CEU][hapmap]
rs2921923	0.92[CEU][hapmap]
rs2926411	0.93[CEU][hapmap]
rs4628594	1.00[CEU][hapmap]
rs7067725	0.93[CEU][hapmap]
rs7088140	0.88[CEU][hapmap]
rs7090681	0.85[CEU][hapmap]
rs7898068	0.93[CEU][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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