Variant report

Variant	rs10825150
Chromosome Location	chr10:55645953-55645954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10763029	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10763031	0.84[CEU][hapmap]
rs10825139	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs10825154	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10825158	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10825164	0.83[EUR][1000 genomes]
rs10825169	0.84[CEU][hapmap];0.87[TSI][hapmap]
rs11003917	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs1900414	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1900437	0.96[CEU][hapmap]
rs1900438	0.84[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs2121524	0.82[EUR][1000 genomes]
rs2384337	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs2593126	0.82[CHB][hapmap]
rs2921922	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2921923	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2926411	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs34989793	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4628594	1.00[CEU][hapmap]
rs7067725	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7088140	0.88[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7089225	0.83[EUR][1000 genomes]
rs7090681	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7101001	0.82[EUR][1000 genomes]
rs7894095	0.84[EUR][1000 genomes]
rs7898068	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55645800-55646600	Enhancers	Liver	Liver

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