Variant report

Variant	rs7067725
Chromosome Location	chr10:55664026-55664027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55658704..55661053-chr10:55661936..55664959,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10763029	0.93[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10763031	0.93[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs10825139	0.93[CEU][hapmap]
rs10825150	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10825154	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10825158	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10825164	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10825168	0.89[JPT][hapmap]
rs10825169	0.92[CEU][hapmap]
rs11003908	0.83[JPT][hapmap]
rs11003917	0.93[CEU][hapmap];0.86[CHB][hapmap]
rs11003924	0.82[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs11003925	0.86[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs11003927	0.89[JPT][hapmap]
rs16937840	0.84[JPT][hapmap]
rs1900414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900425	0.83[JPT][hapmap]
rs1900427	0.83[JPT][hapmap]
rs1900437	0.86[CEU][hapmap]
rs1900438	0.92[CEU][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap]
rs1911427	0.94[JPT][hapmap]
rs2121524	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2384337	0.93[CEU][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs2593126	0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2610846	0.84[JPT][hapmap]
rs2921922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs34989793	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478892	0.83[JPT][hapmap]
rs4628594	0.96[CEU][hapmap]
rs7088140	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs7089225	0.91[EUR][1000 genomes]
rs7090681	0.93[CEU][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7101001	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7894095	0.93[EUR][1000 genomes]
rs7898068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905665	0.83[JPT][hapmap]
rs7907348	0.84[EUR][1000 genomes]
rs7908973	0.82[ASN][1000 genomes]
rs7910613	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55662800-55664400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:55663000-55665200	Enhancers	NHEK	skin
3	chr10:55663200-55664400	Enhancers	HMEC	breast
4	chr10:55664000-55664200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:55664000-55665000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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