Variant report

Variant	rs11003925
Chromosome Location	chr10:55662226-55662227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55658704..55661053-chr10:55661936..55664959,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10763016	0.88[JPT][hapmap]
rs10825147	0.88[JPT][hapmap]
rs10825148	0.88[JPT][hapmap]
rs10825149	0.88[JPT][hapmap]
rs10825154	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10825158	0.92[ASN][1000 genomes]
rs10825166	0.84[JPT][hapmap]
rs10825168	0.94[JPT][hapmap]
rs11003908	0.88[JPT][hapmap]
rs11003924	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003927	0.94[JPT][hapmap]
rs16913796	0.94[TSI][hapmap]
rs16937824	0.83[EUR][1000 genomes]
rs16937840	0.94[JPT][hapmap]
rs1900414	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1900425	0.88[JPT][hapmap]
rs1900427	0.88[JPT][hapmap]
rs1911427	0.88[JPT][hapmap]
rs2069217	0.82[JPT][hapmap]
rs2254115	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2384337	0.89[JPT][hapmap]
rs2593102	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2593126	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2593137	0.83[EUR][1000 genomes]
rs2610846	0.94[JPT][hapmap]
rs2610922	0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs2921922	0.85[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2921923	0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs2926411	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs34989793	0.99[ASN][1000 genomes]
rs4478892	0.88[JPT][hapmap]
rs6481044	0.86[TSI][hapmap]
rs7067725	0.86[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7083009	0.88[JPT][hapmap]
rs7090681	0.80[ASN][1000 genomes]
rs7101001	0.85[ASN][1000 genomes]
rs724434	0.86[TSI][hapmap]
rs7898068	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7905665	0.88[JPT][hapmap]
rs7905801	0.88[JPT][hapmap]
rs7908973	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55658600-55663000	Weak transcription	NHEK	skin

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