Variant report

Variant	rs16913796
Chromosome Location	chr10:55659824-55659825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55658704..55661053-chr10:55661936..55664959,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11003924	0.94[TSI][hapmap]
rs11003925	0.94[TSI][hapmap]
rs12412902	0.82[CEU][hapmap]
rs12762435	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12763311	1.00[JPT][hapmap]
rs12768837	0.86[EUR][1000 genomes]
rs12770409	0.86[EUR][1000 genomes]
rs12778839	1.00[JPT][hapmap]
rs12781255	1.00[CEU][hapmap]
rs16937824	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707690	0.82[CEU][hapmap]
rs2254115	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593102	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593137	0.92[EUR][1000 genomes]
rs2610922	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926400	0.89[EUR][1000 genomes]
rs2926401	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4935096	1.00[JPT][hapmap]
rs6481044	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs7090247	0.82[CEU][hapmap]
rs7099099	0.82[CEU][hapmap]
rs71490985	0.80[EUR][1000 genomes]
rs724434	0.81[TSI][hapmap]
rs7894095	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55658600-55663000	Weak transcription	NHEK	skin
2	chr10:55659000-55660600	Enhancers	Fetal Kidney	kidney
3	chr10:55659200-55660600	Enhancers	Fetal Intestine Large	intestine
4	chr10:55659400-55660200	Enhancers	Colon Smooth Muscle	Colon
5	chr10:55659400-55660600	Enhancers	Fetal Intestine Small	intestine
6	chr10:55659800-55660200	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
7	chr10:55659800-55660400	Enhancers	Fetal Stomach	stomach

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