Variant report

Variant	rs17707690
Chromosome Location	chr10:55681340-55681341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11004040	0.85[YRI][hapmap]
rs12412902	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12762435	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs12768837	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12770409	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12781255	0.87[CEU][hapmap]
rs16913796	0.82[CEU][hapmap]
rs16937824	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16937901	0.85[YRI][hapmap]
rs2254115	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2593102	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2593137	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2610922	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2926400	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2926401	0.87[EUR][1000 genomes]
rs35001277	0.82[AFR][1000 genomes]
rs35553300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36074661	0.92[EUR][1000 genomes]
rs6481044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7088140	0.80[ASN][1000 genomes]
rs7089225	0.83[ASN][1000 genomes]
rs7090247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7099099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71490985	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs724434	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7901828	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550948	chr10:55662089-55714355	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv467213	chr10:55662089-55725234	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550949	chr10:55662089-55725234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550950	chr10:55662156-55714355	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55677800-55683800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:55681000-55681400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:55681200-55681400	Enhancers	Right Atrium	heart

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